Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 AL162412.1-201ENST00000567129 965 ntBASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 CYP2T1P-201ENST00000432607 1285 ntBASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
DEPDC4Q8N2C3 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 CDV3P1-201ENST00000471403 739 ntBASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
DEPDC4Q8N2C3 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
DEPDC4Q8N2C3 MKRN4P-201ENST00000444706 1521 ntBASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms