Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
KRT40Q6A162 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC22.55■■□□□ 1.2
KRT40Q6A162 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC22.55■■□□□ 1.2
KRT40Q6A162 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
KRT40Q6A162 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
KRT40Q6A162 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
KRT40Q6A162 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC22.55■■□□□ 1.2
KRT40Q6A162 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
KRT40Q6A162 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
KRT40Q6A162 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
KRT40Q6A162 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
KRT40Q6A162 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
KRT40Q6A162 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC22.54■■□□□ 1.2
KRT40Q6A162 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
KRT40Q6A162 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC22.54■■□□□ 1.2
KRT40Q6A162 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC22.54■■□□□ 1.2
KRT40Q6A162 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC22.54■■□□□ 1.2
KRT40Q6A162 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC22.54■■□□□ 1.2
KRT40Q6A162 SPIB-206ENST00000596074 847 ntTSL 2 BASIC22.54■■□□□ 1.2
KRT40Q6A162 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC22.54■■□□□ 1.2
KRT40Q6A162 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
KRT40Q6A162 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
KRT40Q6A162 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
KRT40Q6A162 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC22.54■■□□□ 1.2
KRT40Q6A162 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
KRT40Q6A162 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC22.53■■□□□ 1.2
KRT40Q6A162 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC22.53■■□□□ 1.2
KRT40Q6A162 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 YBX1P10-201ENST00000444752 975 ntBASIC22.53■■□□□ 1.2
KRT40Q6A162 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC22.53■■□□□ 1.2
KRT40Q6A162 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC22.53■■□□□ 1.2
KRT40Q6A162 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
KRT40Q6A162 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 AC233263.1-201ENST00000578059 224 ntBASIC22.53■■□□□ 1.2
KRT40Q6A162 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC22.53■■□□□ 1.2
KRT40Q6A162 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC22.53■■□□□ 1.2
KRT40Q6A162 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
KRT40Q6A162 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC22.53■■□□□ 1.2
KRT40Q6A162 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC22.53■■□□□ 1.2
KRT40Q6A162 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KRT40Q6A162 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
KRT40Q6A162 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
KRT40Q6A162 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
KRT40Q6A162 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
KRT40Q6A162 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
KRT40Q6A162 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC22.52■■□□□ 1.2
KRT40Q6A162 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC22.52■■□□□ 1.2
KRT40Q6A162 RPS20-210ENST00000523936 899 ntTSL 2 BASIC22.52■■□□□ 1.2
KRT40Q6A162 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC22.52■■□□□ 1.2
KRT40Q6A162 LINC01023-201ENST00000606054 436 ntBASIC22.52■■□□□ 1.2
KRT40Q6A162 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
KRT40Q6A162 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
KRT40Q6A162 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
KRT40Q6A162 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
KRT40Q6A162 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC22.52■■□□□ 1.2
KRT40Q6A162 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
KRT40Q6A162 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
KRT40Q6A162 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
KRT40Q6A162 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
KRT40Q6A162 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
KRT40Q6A162 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
KRT40Q6A162 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
KRT40Q6A162 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
KRT40Q6A162 TREX2-204ENST00000370212 861 ntTSL 5 BASIC22.51■■□□□ 1.19
KRT40Q6A162 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
KRT40Q6A162 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
KRT40Q6A162 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC22.51■■□□□ 1.19
KRT40Q6A162 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
KRT40Q6A162 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
KRT40Q6A162 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC22.51■■□□□ 1.19
KRT40Q6A162 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC22.51■■□□□ 1.19
KRT40Q6A162 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
KRT40Q6A162 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
KRT40Q6A162 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
KRT40Q6A162 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
KRT40Q6A162 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
KRT40Q6A162 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
KRT40Q6A162 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC22.51■■□□□ 1.19
KRT40Q6A162 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
KRT40Q6A162 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
KRT40Q6A162 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
KRT40Q6A162 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
KRT40Q6A162 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC22.5■■□□□ 1.19
KRT40Q6A162 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
KRT40Q6A162 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
KRT40Q6A162 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
KRT40Q6A162 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC22.5■■□□□ 1.19
KRT40Q6A162 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
KRT40Q6A162 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms