Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCNAP12004 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCNAP12004 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
PCNAP12004 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.93■□□□□ 0.62
PCNAP12004 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.93■□□□□ 0.62
PCNAP12004 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.93■□□□□ 0.62
PCNAP12004 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.93■□□□□ 0.62
PCNAP12004 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.93■□□□□ 0.62
PCNAP12004 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.93■□□□□ 0.62
PCNAP12004 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.93■□□□□ 0.62
PCNAP12004 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.93■□□□□ 0.62
PCNAP12004 SOX15-203ENST00000570788 1093 ntBASIC18.93■□□□□ 0.62
PCNAP12004 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.93■□□□□ 0.62
PCNAP12004 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.93■□□□□ 0.62
PCNAP12004 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.93■□□□□ 0.62
PCNAP12004 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
PCNAP12004 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.93■□□□□ 0.62
PCNAP12004 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.93■□□□□ 0.62
PCNAP12004 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
PCNAP12004 HCG11-201ENST00000411553 5696 ntBASIC18.93■□□□□ 0.62
PCNAP12004 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PCNAP12004 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
PCNAP12004 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCNAP12004 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.92■□□□□ 0.62
PCNAP12004 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.92■□□□□ 0.62
PCNAP12004 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.92■□□□□ 0.62
PCNAP12004 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.92■□□□□ 0.62
PCNAP12004 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
PCNAP12004 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
PCNAP12004 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.92■□□□□ 0.62
PCNAP12004 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCNAP12004 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
PCNAP12004 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PCNAP12004 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
PCNAP12004 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCNAP12004 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
PCNAP12004 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PCNAP12004 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.91■□□□□ 0.62
PCNAP12004 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
PCNAP12004 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCNAP12004 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.91■□□□□ 0.62
PCNAP12004 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PCNAP12004 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.91■□□□□ 0.62
PCNAP12004 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
PCNAP12004 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCNAP12004 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
PCNAP12004 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.91■□□□□ 0.62
PCNAP12004 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCNAP12004 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCNAP12004 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCNAP12004 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCNAP12004 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.9■□□□□ 0.62
PCNAP12004 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.9■□□□□ 0.62
PCNAP12004 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.9■□□□□ 0.62
PCNAP12004 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCNAP12004 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCNAP12004 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.9■□□□□ 0.62
PCNAP12004 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCNAP12004 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCNAP12004 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.9■□□□□ 0.62
PCNAP12004 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.9■□□□□ 0.62
PCNAP12004 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.9■□□□□ 0.62
PCNAP12004 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.9■□□□□ 0.62
PCNAP12004 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCNAP12004 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCNAP12004 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCNAP12004 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
PCNAP12004 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
PCNAP12004 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.9■□□□□ 0.62
PCNAP12004 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCNAP12004 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms