Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 RAB11FIP3-205ENST00000450428 3203 ntTSL 2 BASIC13.09□□□□□ -0.312e-9■■□□□ 12.2
SMNDC1O75940 RAB11FIP3-202ENST00000412256 558 ntTSL 212.64□□□□□ -0.392e-9■■□□□ 12.2
SMNDC1O75940 RAB11FIP3-203ENST00000434585 3550 ntAPPRIS ALT2 TSL 512.37□□□□□ -0.432e-9■■□□□ 12.2
SMNDC1O75940 RAB11FIP3-211ENST00000495663 529 ntTSL 210.87□□□□□ -0.672e-9■■□□□ 12.2
SMNDC1O75940 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.582e-6■■□□□ 12.2
SMNDC1O75940 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.332e-6■■□□□ 12.2
SMNDC1O75940 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.92■□□□□ 0.32e-6■■□□□ 12.2
SMNDC1O75940 VPS13D-204ENST00000469054 567 ntTSL 310.63□□□□□ -0.712e-10■■□□□ 12.2
SMNDC1O75940 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.221e-15■■□□□ 12.2
SMNDC1O75940 LOXL1-203ENST00000566011 2786 ntTSL 521.88■■□□□ 1.091e-15■■□□□ 12.2
SMNDC1O75940 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.96■□□□□ 0.38e-7■■□□□ 12.1
SMNDC1O75940 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.068e-7■■□□□ 12.1
SMNDC1O75940 PPIL2-205ENST00000446951 1926 ntTSL 1 (best)13.92□□□□□ -0.188e-7■■□□□ 12.1
SMNDC1O75940 PPIL2-201ENST00000335025 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.48e-7■■□□□ 12.1
SMNDC1O75940 PPIL2-203ENST00000406385 3875 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.738e-7■■□□□ 12.1
SMNDC1O75940 PPIL2-204ENST00000417788 4213 ntTSL 29.72□□□□□ -0.858e-7■■□□□ 12.1
SMNDC1O75940 SLC3A2-220ENST00000542922 2174 ntTSL 213.73□□□□□ -0.214e-9■■□□□ 12.1
SMNDC1O75940 DDX17-207ENST00000475004 443 ntTSL 39.02□□□□□ -0.977e-55■■□□□ 12.1
SMNDC1O75940 SLC25A39-206ENST00000585695 1121 ntTSL 220.53■□□□□ 0.882e-8■■□□□ 12.1
SMNDC1O75940 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.53■□□□□ 0.882e-8■■□□□ 12.1
SMNDC1O75940 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.692e-8■■□□□ 12.1
SMNDC1O75940 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.532e-8■■□□□ 12.1
SMNDC1O75940 SLC25A39-210ENST00000588315 1409 ntTSL 218.06■□□□□ 0.482e-8■■□□□ 12.1
SMNDC1O75940 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.322e-8■■□□□ 12.1
SMNDC1O75940 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.99□□□□□ -0.172e-8■■□□□ 12.1
SMNDC1O75940 SLC25A39-213ENST00000591006 2217 ntTSL 213.98□□□□□ -0.172e-8■■□□□ 12.1
SMNDC1O75940 SLC25A39-217ENST00000593166 797 ntTSL 313.84□□□□□ -0.192e-8■■□□□ 12.1
SMNDC1O75940 SLC25A39-211ENST00000588767 807 ntTSL 513.4□□□□□ -0.262e-8■■□□□ 12.1
SMNDC1O75940 MIDN-202ENST00000586757 1163 ntAPPRIS ALT2 TSL 521.94■■□□□ 1.14e-8■■□□□ 12.1
SMNDC1O75940 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.844e-8■■□□□ 12.1
SMNDC1O75940 ATF7IP2-209ENST00000562396 1681 nt19.95■□□□□ 0.784e-8■■□□□ 12.1
SMNDC1O75940 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.494e-8■■□□□ 12.1
SMNDC1O75940 MSH5-210ENST00000463094 796 ntTSL 217.97■□□□□ 0.474e-8■■□□□ 12.1
SMNDC1O75940 MSH5-215ENST00000482280 944 ntTSL 217.97■□□□□ 0.474e-8■■□□□ 12.1
SMNDC1O75940 TUBB4B-202ENST00000604929 2035 ntTSL 1 (best)17.85■□□□□ 0.455e-7■■□□□ 12.1
SMNDC1O75940 MIDN-205ENST00000591302 523 ntTSL 217.05■□□□□ 0.324e-8■■□□□ 12.1
SMNDC1O75940 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.284e-8■■□□□ 12.1
SMNDC1O75940 MSH5-207ENST00000425703 694 ntTSL 516.54■□□□□ 0.244e-8■■□□□ 12.1
SMNDC1O75940 ATF7IP2-216ENST00000569900 559 ntTSL 414.74□□□□□ -0.054e-8■■□□□ 12.1
SMNDC1O75940 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.085e-7■■□□□ 12.1
SMNDC1O75940 ATF7IP2-207ENST00000561932 538 ntTSL 413.7□□□□□ -0.224e-8■■□□□ 12.1
SMNDC1O75940 GAB3-201ENST00000369568 3704 ntAPPRIS ALT2 TSL 212.05□□□□□ -0.484e-8■■□□□ 12.1
SMNDC1O75940 ATF7IP2-217ENST00000569939 564 ntTSL 410.12□□□□□ -0.794e-8■■□□□ 12.1
SMNDC1O75940 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC9.85□□□□□ -0.834e-8■■□□□ 12.1
SMNDC1O75940 ATF7IP2-205ENST00000535850 1907 ntTSL 29.14□□□□□ -0.954e-8■■□□□ 12.1
SMNDC1O75940 ATF7IP2-210ENST00000562527 625 ntTSL 39.06□□□□□ -0.964e-8■■□□□ 12.1
SMNDC1O75940 GAB3-202ENST00000369575 4718 ntAPPRIS P3 TSL 1 (best) BASIC9.02□□□□□ -0.964e-8■■□□□ 12.1
SMNDC1O75940 HOXC10-205ENST00000515593 526 ntTSL 48.14□□□□□ -1.114e-8■■□□□ 12.1
SMNDC1O75940 GAB3-205ENST00000475685 298 ntTSL 57.54□□□□□ -1.24e-8■■□□□ 12.1
SMNDC1O75940 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC7.27□□□□□ -1.254e-8■■□□□ 12.1
SMNDC1O75940 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.254e-8■■□□□ 12.1
SMNDC1O75940 GAB3-206ENST00000496390 4240 ntTSL 1 (best)6.76□□□□□ -1.334e-8■■□□□ 12.1
SMNDC1O75940 ATF7IP2-218ENST00000570163 559 ntTSL 26.73□□□□□ -1.334e-8■■□□□ 12.1
SMNDC1O75940 ATF7IP2-211ENST00000564797 450 ntTSL 36.31□□□□□ -1.44e-8■■□□□ 12.1
SMNDC1O75940 ATF7IP2-208ENST00000562102 558 ntTSL 46.26□□□□□ -1.414e-8■■□□□ 12.1
SMNDC1O75940 ATF7IP2-214ENST00000566316 576 ntTSL 26.25□□□□□ -1.414e-8■■□□□ 12.1
SMNDC1O75940 EME1-202ENST00000393271 2354 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.172e-7■■□□□ 12.1
SMNDC1O75940 EME1-204ENST00000510007 1538 ntTSL 1 (best)12.92□□□□□ -0.342e-7■■□□□ 12.1
SMNDC1O75940 EME1-207ENST00000511648 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.372e-7■■□□□ 12.1
SMNDC1O75940 EME1-201ENST00000338165 2339 ntAPPRIS P3 TSL 2 BASIC12.69□□□□□ -0.382e-7■■□□□ 12.1
SMNDC1O75940 EME1-208ENST00000511711 679 ntTSL 511.55□□□□□ -0.562e-7■■□□□ 12.1
SMNDC1O75940 EME1-205ENST00000510246 1010 ntTSL 511.26□□□□□ -0.612e-7■■□□□ 12.1
SMNDC1O75940 EME1-206ENST00000511519 562 ntTSL 59.2□□□□□ -0.942e-7■■□□□ 12.1
SMNDC1O75940 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.923e-7■■□□□ 12.1
SMNDC1O75940 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.663e-7■■□□□ 12.1
SMNDC1O75940 GRINA-205ENST00000529301 1075 ntTSL 318.25■□□□□ 0.513e-7■■□□□ 12.1
SMNDC1O75940 GRINA-207ENST00000531992 597 ntTSL 216.63■□□□□ 0.253e-7■■□□□ 12.1
SMNDC1O75940 GRINA-203ENST00000525513 796 ntTSL 514.03□□□□□ -0.163e-7■■□□□ 12.1
SMNDC1O75940 GRINA-210ENST00000534791 1050 ntTSL 59.48□□□□□ -0.893e-7■■□□□ 12.1
SMNDC1O75940 GRINA-208ENST00000533044 564 ntTSL 38.4□□□□□ -1.063e-7■■□□□ 12.1
SMNDC1O75940 AGFG2-203ENST00000430857 915 ntTSL 523.31■■□□□ 1.327e-7■■□□□ 12.1
SMNDC1O75940 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.727e-7■■□□□ 12.1
SMNDC1O75940 AGFG2-205ENST00000477022 1327 ntTSL 1 (best)17.88■□□□□ 0.457e-7■■□□□ 12.1
SMNDC1O75940 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.197e-7■■□□□ 12.1
SMNDC1O75940 VPS29-204ENST00000548259 563 ntTSL 215.39■□□□□ 0.057e-7■■□□□ 12.1
SMNDC1O75940 LAMA5-203ENST00000370691 3160 ntTSL 1 (best)15.09■□□□□ 0.011e-12■■□□□ 12.1
SMNDC1O75940 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.127e-7■■□□□ 12.1
SMNDC1O75940 VPS29-209ENST00000551655 766 ntTSL 513.15□□□□□ -0.37e-7■■□□□ 12.1
SMNDC1O75940 VPS29-211ENST00000553128 449 ntTSL 311.73□□□□□ -0.537e-7■■□□□ 12.1
SMNDC1O75940 GNAS-245ENST00000487862 1782 ntTSL 211.36□□□□□ -0.597e-7■■□□□ 12.1
SMNDC1O75940 GSAP-204ENST00000426477 543 ntTSL 411.11□□□□□ -0.637e-7■■□□□ 12.1
SMNDC1O75940 TMEM2-204ENST00000377057 2637 ntTSL 210.59□□□□□ -0.717e-7■■□□□ 12.1
SMNDC1O75940 NEMF-213ENST00000556925 3699 ntTSL 510.32□□□□□ -0.767e-7■■□□□ 12.1
SMNDC1O75940 TMEM2-206ENST00000396272 1437 ntTSL 2 BASIC9.86□□□□□ -0.837e-7■■□□□ 12.1
SMNDC1O75940 VPS29-208ENST00000550267 810 ntTSL 29.51□□□□□ -0.897e-7■■□□□ 12.1
SMNDC1O75940 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC9.18□□□□□ -0.947e-7■■□□□ 12.1
SMNDC1O75940 GSAP-213ENST00000491796 2618 ntTSL 1 (best)9.1□□□□□ -0.957e-7■■□□□ 12.1
SMNDC1O75940 TMEM2-210ENST00000542935 5372 ntTSL 1 (best)8.24□□□□□ -1.097e-7■■□□□ 12.1
SMNDC1O75940 NEMF-206ENST00000555411 573 ntTSL 47.98□□□□□ -1.137e-7■■□□□ 12.1
SMNDC1O75940 GSAP-209ENST00000449779 2975 ntTSL 27.93□□□□□ -1.147e-7■■□□□ 12.1
SMNDC1O75940 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC7.7□□□□□ -1.187e-7■■□□□ 12.1
SMNDC1O75940 TMEM2-207ENST00000474495 779 ntTSL 27.58□□□□□ -1.27e-7■■□□□ 12.1
SMNDC1O75940 NEMF-211ENST00000556691 2062 ntTSL 27.51□□□□□ -1.217e-7■■□□□ 12.1
SMNDC1O75940 NEMF-208ENST00000555970 3029 ntTSL 27.37□□□□□ -1.237e-7■■□□□ 12.1
SMNDC1O75940 GNAS-242ENST00000483387 593 ntTSL 27.37□□□□□ -1.237e-7■■□□□ 12.1
SMNDC1O75940 GNAS-255ENST00000496934 2837 ntTSL 27.32□□□□□ -1.247e-7■■□□□ 12.1
SMNDC1O75940 GSAP-207ENST00000440473 866 ntTSL 57.19□□□□□ -1.267e-7■■□□□ 12.1
SMNDC1O75940 NEMF-209ENST00000556074 3047 ntTSL 1 (best)7.16□□□□□ -1.267e-7■■□□□ 12.1
SMNDC1O75940 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.337e-7■■□□□ 12.1
SMNDC1O75940 GSAP-203ENST00000415112 564 ntTSL 34.86□□□□□ -1.637e-7■■□□□ 12.1
Retrieved 100 of 11,362 protein–RNA pairs in 53.9 ms