Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 PNMA6B-201ENST00000538162 1200 ntBASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 SOX15-203ENST00000570788 1093 ntBASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC093484.2-201ENST00000580996 2166 ntBASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 RNF121-214ENST00000533380 870 ntTSL 3 BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 SPIB-206ENST00000596074 847 ntTSL 2 BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC26.23■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 KRT16P6-202ENST00000425692 1426 ntBASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 HLA-G-202ENST00000376815 851 ntBASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 HLA-G-203ENST00000376818 1127 ntBASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 C1QBPP2-201ENST00000528754 825 ntBASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC005829.2-201ENST00000571422 1056 ntBASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC233263.1-201ENST00000578059 224 ntBASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC018553.1-201ENST00000616682 1458 ntBASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC26.22■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 PHGDH-210ENST00000641115 1638 ntBASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 USF2-205ENST00000594064 1179 ntTSL 2 BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC26.2■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC26.2■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC26.2■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AC023632.3-201ENST00000521633 145 ntBASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AC012306.2-201ENST00000609350 630 ntBASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 TMEM179-206ENST00000616017 1645 ntBASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC26.2■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 MDFI-202ENST00000373050 809 ntTSL 2 BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms