Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 ECEL1P1-201ENST00000373592 1742 ntBASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL25A1Q9BXS0 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.88■□□□□ 0.77
COL25A1Q9BXS0 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 MIR770-201ENST00000390219 98 ntBASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 FAM197Y3-203ENST00000618346 717 ntBASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 AC116351.2-201ENST00000606540 1585 ntBASIC19.87■□□□□ 0.77
COL25A1Q9BXS0 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 MED15P5-201ENST00000423150 992 ntBASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
COL25A1Q9BXS0 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL25A1Q9BXS0 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 AC007274.1-201ENST00000439805 662 ntBASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 AC245100.3-201ENST00000441281 285 ntBASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL25A1Q9BXS0 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms