Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 AC018553.1-201ENST00000616682 1458 ntBASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 AC124283.5-201ENST00000624661 1809 ntBASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 AC083906.2-201ENST00000511578 360 ntBASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM56Q9BRZ2 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM56Q9BRZ2 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 DUSP5P2-201ENST00000426873 1033 ntBASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.83■□□□□ 0.77
TRIM56Q9BRZ2 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
TRIM56Q9BRZ2 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM56Q9BRZ2 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM56Q9BRZ2 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM56Q9BRZ2 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 TNXA-203ENST00000507684 2038 ntBASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 AC006970.2-201ENST00000450065 779 ntBASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 AC098934.4-201ENST00000564127 592 ntBASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms