Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC14.6□□□□□ -0.07
LINC00477Q96M19 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC14.6□□□□□ -0.07
LINC00477Q96M19 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC14.6□□□□□ -0.07
LINC00477Q96M19 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC14.6□□□□□ -0.07
LINC00477Q96M19 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC14.6□□□□□ -0.07
LINC00477Q96M19 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC14.6□□□□□ -0.07
LINC00477Q96M19 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
LINC00477Q96M19 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC14.6□□□□□ -0.07
LINC00477Q96M19 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC14.6□□□□□ -0.07
LINC00477Q96M19 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC14.6□□□□□ -0.07
LINC00477Q96M19 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC14.6□□□□□ -0.07
LINC00477Q96M19 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00477Q96M19 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00477Q96M19 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00477Q96M19 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC14.59□□□□□ -0.07
LINC00477Q96M19 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
LINC00477Q96M19 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00477Q96M19 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC14.59□□□□□ -0.07
LINC00477Q96M19 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
LINC00477Q96M19 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00477Q96M19 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC14.59□□□□□ -0.07
LINC00477Q96M19 SERPINH1P1-201ENST00000419794 1249 ntBASIC14.59□□□□□ -0.07
LINC00477Q96M19 AF201337.1-201ENST00000520239 748 ntBASIC14.59□□□□□ -0.07
LINC00477Q96M19 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC14.59□□□□□ -0.07
LINC00477Q96M19 AC022517.1-201ENST00000592429 346 ntBASIC14.59□□□□□ -0.07
LINC00477Q96M19 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC14.59□□□□□ -0.07
LINC00477Q96M19 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00477Q96M19 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00477Q96M19 MKRN4P-201ENST00000444706 1521 ntBASIC14.59□□□□□ -0.07
LINC00477Q96M19 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC14.59□□□□□ -0.07
LINC00477Q96M19 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00477Q96M19 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00477Q96M19 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00477Q96M19 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00477Q96M19 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC14.59□□□□□ -0.07
LINC00477Q96M19 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC14.58□□□□□ -0.07
LINC00477Q96M19 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
LINC00477Q96M19 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
LINC00477Q96M19 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
LINC00477Q96M19 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC14.58□□□□□ -0.08
LINC00477Q96M19 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC14.58□□□□□ -0.08
LINC00477Q96M19 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC14.58□□□□□ -0.08
LINC00477Q96M19 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 AL020996.1-203ENST00000536896 2307 ntBASIC14.58□□□□□ -0.08
LINC00477Q96M19 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC14.58□□□□□ -0.08
LINC00477Q96M19 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC14.58□□□□□ -0.08
LINC00477Q96M19 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC14.58□□□□□ -0.08
LINC00477Q96M19 AC073210.2-201ENST00000430369 194 ntBASIC14.58□□□□□ -0.08
LINC00477Q96M19 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC14.58□□□□□ -0.08
LINC00477Q96M19 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC14.58□□□□□ -0.08
LINC00477Q96M19 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC14.58□□□□□ -0.08
LINC00477Q96M19 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
LINC00477Q96M19 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC14.58□□□□□ -0.08
LINC00477Q96M19 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC14.58□□□□□ -0.08
LINC00477Q96M19 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00477Q96M19 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 TFP1-202ENST00000475455 1573 ntBASIC14.57□□□□□ -0.08
LINC00477Q96M19 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms