Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
SKA1Q96BD8 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.98■□□□□ 0.79
SKA1Q96BD8 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
SKA1Q96BD8 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.98■□□□□ 0.79
SKA1Q96BD8 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SKA1Q96BD8 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SKA1Q96BD8 AC004408.2-201ENST00000623613 2777 ntBASIC19.98■□□□□ 0.79
SKA1Q96BD8 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
SKA1Q96BD8 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SKA1Q96BD8 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SKA1Q96BD8 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SKA1Q96BD8 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
SKA1Q96BD8 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SKA1Q96BD8 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SKA1Q96BD8 ECEL1P3-201ENST00000427961 737 ntBASIC19.98■□□□□ 0.79
SKA1Q96BD8 AC023632.3-201ENST00000521633 145 ntBASIC19.98■□□□□ 0.79
SKA1Q96BD8 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.98■□□□□ 0.79
SKA1Q96BD8 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.98■□□□□ 0.79
SKA1Q96BD8 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.98■□□□□ 0.79
SKA1Q96BD8 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SKA1Q96BD8 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SKA1Q96BD8 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SKA1Q96BD8 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SKA1Q96BD8 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SKA1Q96BD8 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
SKA1Q96BD8 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SKA1Q96BD8 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 AC211429.1-201ENST00000415277 523 ntBASIC19.97■□□□□ 0.79
SKA1Q96BD8 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 BX088651.1-201ENST00000540551 451 ntBASIC19.97■□□□□ 0.79
SKA1Q96BD8 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SKA1Q96BD8 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
SKA1Q96BD8 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
SKA1Q96BD8 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.96■□□□□ 0.79
SKA1Q96BD8 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.96■□□□□ 0.79
SKA1Q96BD8 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SKA1Q96BD8 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.96■□□□□ 0.79
SKA1Q96BD8 TSPY7P-201ENST00000431358 1114 ntBASIC19.96■□□□□ 0.79
SKA1Q96BD8 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.96■□□□□ 0.79
SKA1Q96BD8 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 AL121829.2-201ENST00000620908 328 ntBASIC19.96■□□□□ 0.79
SKA1Q96BD8 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.96■□□□□ 0.79
SKA1Q96BD8 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SKA1Q96BD8 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SKA1Q96BD8 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.95■□□□□ 0.78
SKA1Q96BD8 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.95■□□□□ 0.78
SKA1Q96BD8 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.95■□□□□ 0.78
SKA1Q96BD8 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.95■□□□□ 0.78
SKA1Q96BD8 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms