Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 LINC01568-207ENST00000641790 1380 ntBASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 TREX1-205ENST00000625293 1783 ntBASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 MIR1238-201ENST00000408483 83 ntBASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 RBM42-202ENST00000586618 771 ntTSL 3 BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 WDR88-203ENST00000592765 651 ntTSL 5 BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 REXO1L10P-201ENST00000615707 1290 ntBASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
SH3RF1Q7Z6J0 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 CYP2D8P-201ENST00000433633 1490 ntBASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 AC124283.5-201ENST00000624661 1809 ntBASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 F2R-202ENST00000505600 442 ntTSL 2 BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 AL031963.3-201ENST00000606441 850 ntBASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SH3RF1Q7Z6J0 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 TERF1P1-201ENST00000311003 1181 ntBASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 AL353807.1-201ENST00000427475 662 ntBASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 NUDT16P1-203ENST00000513809 620 ntBASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 NTF6B-201ENST00000591913 560 ntBASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 AC073195.1-201ENST00000607241 877 ntBASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 AL121829.2-201ENST00000620908 328 ntBASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 AC009237.14-201ENST00000609975 1594 ntBASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC22.36■■□□□ 1.17
SH3RF1Q7Z6J0 NBPF21P-201ENST00000425093 1451 ntBASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 AC073508.3-201ENST00000619697 1419 ntBASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 UNC93B2-201ENST00000285383 730 ntBASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 AL390955.1-201ENST00000428694 934 ntBASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 CFL2-205ENST00000555765 632 ntTSL 2 BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 GLDC-219ENST00000640208 420 ntTSL 2 BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SH3RF1Q7Z6J0 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC22.34■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms