Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.52■□□□□ 0.24
USF1P22415 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.52■□□□□ 0.24
USF1P22415 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
USF1P22415 AL049597.2-201ENST00000565575 961 ntBASIC16.52■□□□□ 0.24
USF1P22415 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.52■□□□□ 0.24
USF1P22415 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.52■□□□□ 0.24
USF1P22415 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
USF1P22415 AL445228.2-201ENST00000605589 952 ntBASIC16.52■□□□□ 0.24
USF1P22415 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.52■□□□□ 0.24
USF1P22415 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
USF1P22415 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
USF1P22415 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
USF1P22415 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
USF1P22415 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
USF1P22415 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
USF1P22415 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
USF1P22415 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
USF1P22415 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
USF1P22415 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
USF1P22415 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
USF1P22415 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC16.51■□□□□ 0.23
USF1P22415 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
USF1P22415 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
USF1P22415 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.51■□□□□ 0.23
USF1P22415 ARMC10P1-201ENST00000313754 855 ntBASIC16.51■□□□□ 0.23
USF1P22415 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.51■□□□□ 0.23
USF1P22415 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.51■□□□□ 0.23
USF1P22415 AC116562.2-201ENST00000507042 360 ntBASIC16.51■□□□□ 0.23
USF1P22415 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.51■□□□□ 0.23
USF1P22415 AL590326.2-201ENST00000625139 305 ntBASIC16.51■□□□□ 0.23
USF1P22415 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
USF1P22415 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
USF1P22415 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
USF1P22415 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
USF1P22415 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
USF1P22415 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 KRT18P22-201ENST00000402024 1347 ntBASIC16.5■□□□□ 0.23
USF1P22415 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
USF1P22415 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.5■□□□□ 0.23
USF1P22415 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.5■□□□□ 0.23
USF1P22415 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC16.5■□□□□ 0.23
USF1P22415 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.5■□□□□ 0.23
USF1P22415 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.5■□□□□ 0.23
USF1P22415 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
USF1P22415 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
USF1P22415 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 KRT8P9-201ENST00000558927 1449 ntBASIC16.5■□□□□ 0.23
USF1P22415 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.5■□□□□ 0.23
USF1P22415 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 AP006587.1-201ENST00000534129 1502 ntBASIC16.5■□□□□ 0.23
USF1P22415 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC16.5■□□□□ 0.23
USF1P22415 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
USF1P22415 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USF1P22415 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USF1P22415 AC020907.5-201ENST00000624372 1936 ntBASIC16.49■□□□□ 0.23
USF1P22415 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC16.49■□□□□ 0.23
USF1P22415 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
USF1P22415 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USF1P22415 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USF1P22415 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.49■□□□□ 0.23
USF1P22415 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.49■□□□□ 0.23
USF1P22415 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.49■□□□□ 0.23
USF1P22415 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USF1P22415 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USF1P22415 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.49■□□□□ 0.23
USF1P22415 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USF1P22415 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.49■□□□□ 0.23
USF1P22415 FITM1-202ENST00000559294 800 ntBASIC16.49■□□□□ 0.23
USF1P22415 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.49■□□□□ 0.23
USF1P22415 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.49■□□□□ 0.23
USF1P22415 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.49■□□□□ 0.23
USF1P22415 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.49■□□□□ 0.23
USF1P22415 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USF1P22415 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USF1P22415 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
USF1P22415 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USF1P22415 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.49■□□□□ 0.23
USF1P22415 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USF1P22415 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
USF1P22415 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USF1P22415 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USF1P22415 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USF1P22415 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.48■□□□□ 0.23
USF1P22415 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USF1P22415 AC005521.1-201ENST00000393351 872 ntBASIC16.48■□□□□ 0.23
USF1P22415 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms