Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.97■□□□□ 0.63
PCNAP12004 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
PCNAP12004 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.97■□□□□ 0.63
PCNAP12004 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PCNAP12004 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
PCNAP12004 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.97■□□□□ 0.63
PCNAP12004 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PCNAP12004 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PCNAP12004 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.97■□□□□ 0.63
PCNAP12004 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.97■□□□□ 0.63
PCNAP12004 AC073210.2-201ENST00000430369 194 ntBASIC18.97■□□□□ 0.63
PCNAP12004 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.97■□□□□ 0.63
PCNAP12004 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.97■□□□□ 0.63
PCNAP12004 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
PCNAP12004 PNMA6B-201ENST00000538162 1200 ntBASIC18.97■□□□□ 0.63
PCNAP12004 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.97■□□□□ 0.63
PCNAP12004 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.97■□□□□ 0.63
PCNAP12004 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.97■□□□□ 0.63
PCNAP12004 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
PCNAP12004 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCNAP12004 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PCNAP12004 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
PCNAP12004 AC124283.5-201ENST00000624661 1809 ntBASIC18.97■□□□□ 0.63
PCNAP12004 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCNAP12004 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCNAP12004 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.97■□□□□ 0.63
PCNAP12004 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
PCNAP12004 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.96■□□□□ 0.63
PCNAP12004 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCNAP12004 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCNAP12004 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PCNAP12004 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCNAP12004 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCNAP12004 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCNAP12004 ID1-201ENST00000376105 1233 ntBASIC18.96■□□□□ 0.63
PCNAP12004 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.96■□□□□ 0.63
PCNAP12004 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PCNAP12004 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCNAP12004 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
PCNAP12004 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.96■□□□□ 0.63
PCNAP12004 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PCNAP12004 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
PCNAP12004 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.96■□□□□ 0.63
PCNAP12004 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.96■□□□□ 0.63
PCNAP12004 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PCNAP12004 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCNAP12004 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.96■□□□□ 0.63
PCNAP12004 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCNAP12004 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCNAP12004 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PCNAP12004 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCNAP12004 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PCNAP12004 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PCNAP12004 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCNAP12004 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCNAP12004 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
PCNAP12004 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCNAP12004 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PCNAP12004 AC116351.2-201ENST00000606540 1585 ntBASIC18.95■□□□□ 0.62
PCNAP12004 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCNAP12004 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PCNAP12004 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.95■□□□□ 0.62
PCNAP12004 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.95■□□□□ 0.62
PCNAP12004 RPS2P52-201ENST00000469610 820 ntBASIC18.95■□□□□ 0.62
PCNAP12004 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.95■□□□□ 0.62
PCNAP12004 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.95■□□□□ 0.62
PCNAP12004 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCNAP12004 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.95■□□□□ 0.62
PCNAP12004 TREX1-205ENST00000625293 1783 ntBASIC18.95■□□□□ 0.62
PCNAP12004 BX323043.1-201ENST00000641006 1765 ntBASIC18.95■□□□□ 0.62
PCNAP12004 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.95■□□□□ 0.62
PCNAP12004 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCNAP12004 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PCNAP12004 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.95■□□□□ 0.62
PCNAP12004 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.95■□□□□ 0.62
PCNAP12004 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.95■□□□□ 0.62
PCNAP12004 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCNAP12004 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCNAP12004 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCNAP12004 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCNAP12004 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCNAP12004 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PCNAP12004 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCNAP12004 AC004408.2-201ENST00000623613 2777 ntBASIC18.94■□□□□ 0.62
PCNAP12004 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCNAP12004 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
PCNAP12004 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.94■□□□□ 0.62
PCNAP12004 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.94■□□□□ 0.62
PCNAP12004 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
PCNAP12004 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.94■□□□□ 0.62
PCNAP12004 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.94■□□□□ 0.62
PCNAP12004 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.94■□□□□ 0.62
PCNAP12004 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.94■□□□□ 0.62
PCNAP12004 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.94■□□□□ 0.62
PCNAP12004 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
PCNAP12004 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCNAP12004 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCNAP12004 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCNAP12004 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
PCNAP12004 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms