Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
RB1P06400 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
RB1P06400 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RB1P06400 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RB1P06400 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
RB1P06400 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RB1P06400 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
RB1P06400 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RB1P06400 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.69■□□□□ 0.9
RB1P06400 KRT18P38-201ENST00000449496 1282 ntBASIC20.69■□□□□ 0.9
RB1P06400 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.69■□□□□ 0.9
RB1P06400 CLEC4GP1-201ENST00000596555 870 ntBASIC20.69■□□□□ 0.9
RB1P06400 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
RB1P06400 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RB1P06400 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RB1P06400 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
RB1P06400 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.69■□□□□ 0.9
RB1P06400 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
RB1P06400 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RB1P06400 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RB1P06400 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RB1P06400 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RB1P06400 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.68■□□□□ 0.9
RB1P06400 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RB1P06400 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.68■□□□□ 0.9
RB1P06400 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RB1P06400 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RB1P06400 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.68■□□□□ 0.9
RB1P06400 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.68■□□□□ 0.9
RB1P06400 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
RB1P06400 VENTXP5-201ENST00000523979 775 ntBASIC20.68■□□□□ 0.9
RB1P06400 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.68■□□□□ 0.9
RB1P06400 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RB1P06400 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.68■□□□□ 0.9
RB1P06400 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RB1P06400 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
RB1P06400 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RB1P06400 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RB1P06400 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
RB1P06400 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.68■□□□□ 0.9
RB1P06400 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RB1P06400 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
RB1P06400 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RB1P06400 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.67■□□□□ 0.9
RB1P06400 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.67■□□□□ 0.9
RB1P06400 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.67■□□□□ 0.9
RB1P06400 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.67■□□□□ 0.9
RB1P06400 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.67■□□□□ 0.9
RB1P06400 NEK4P2-201ENST00000580004 1012 ntBASIC20.67■□□□□ 0.9
RB1P06400 AL691432.3-201ENST00000621860 400 ntBASIC20.67■□□□□ 0.9
RB1P06400 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.67■□□□□ 0.9
RB1P06400 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.67■□□□□ 0.9
RB1P06400 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.67■□□□□ 0.9
RB1P06400 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.67■□□□□ 0.9
RB1P06400 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RB1P06400 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.67■□□□□ 0.9
RB1P06400 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.66■□□□□ 0.9
RB1P06400 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.66■□□□□ 0.9
RB1P06400 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.66■□□□□ 0.9
RB1P06400 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.66■□□□□ 0.9
RB1P06400 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.66■□□□□ 0.9
RB1P06400 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.66■□□□□ 0.9
RB1P06400 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.66■□□□□ 0.9
RB1P06400 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 KRT8P45-201ENST00000414328 1447 ntBASIC20.66■□□□□ 0.9
RB1P06400 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RB1P06400 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RB1P06400 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RB1P06400 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RB1P06400 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RB1P06400 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RB1P06400 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RB1P06400 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
RB1P06400 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms