Protein–RNA interactions for Protein: O15353

FOXN1, Forkhead box protein N1, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN1O15353 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
FOXN1O15353 TREX2-204ENST00000370212 861 ntTSL 5 BASIC23.33■■□□□ 1.33
FOXN1O15353 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
FOXN1O15353 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
FOXN1O15353 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
FOXN1O15353 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC23.33■■□□□ 1.33
FOXN1O15353 PTK2-216ENST00000519881 863 ntTSL 3 BASIC23.33■■□□□ 1.33
FOXN1O15353 PNN-205ENST00000556530 601 ntTSL 2 BASIC23.33■■□□□ 1.33
FOXN1O15353 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC23.33■■□□□ 1.33
FOXN1O15353 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
FOXN1O15353 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC23.33■■□□□ 1.33
FOXN1O15353 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
FOXN1O15353 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
FOXN1O15353 AP005212.1-201ENST00000581547 1997 ntBASIC23.32■■□□□ 1.32
FOXN1O15353 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 FSCN1P1-201ENST00000568912 1481 ntBASIC23.32■■□□□ 1.32
FOXN1O15353 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
FOXN1O15353 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC23.32■■□□□ 1.32
FOXN1O15353 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC23.32■■□□□ 1.32
FOXN1O15353 AC130371.2-201ENST00000619443 611 ntBASIC23.32■■□□□ 1.32
FOXN1O15353 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
FOXN1O15353 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
FOXN1O15353 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
FOXN1O15353 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
FOXN1O15353 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
FOXN1O15353 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXN1O15353 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
FOXN1O15353 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
FOXN1O15353 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXN1O15353 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.31■■□□□ 1.32
FOXN1O15353 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC23.31■■□□□ 1.32
FOXN1O15353 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
FOXN1O15353 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
FOXN1O15353 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXN1O15353 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXN1O15353 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXN1O15353 AC004870.1-201ENST00000315132 882 ntBASIC23.31■■□□□ 1.32
FOXN1O15353 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXN1O15353 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
FOXN1O15353 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXN1O15353 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXN1O15353 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC23.31■■□□□ 1.32
FOXN1O15353 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC23.31■■□□□ 1.32
FOXN1O15353 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC23.31■■□□□ 1.32
FOXN1O15353 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXN1O15353 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXN1O15353 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.31■■□□□ 1.32
FOXN1O15353 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXN1O15353 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
FOXN1O15353 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC23.3■■□□□ 1.32
FOXN1O15353 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
FOXN1O15353 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
FOXN1O15353 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
FOXN1O15353 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
FOXN1O15353 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
FOXN1O15353 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
FOXN1O15353 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC23.3■■□□□ 1.32
FOXN1O15353 SDHD-206ENST00000528182 754 ntTSL 3 BASIC23.3■■□□□ 1.32
FOXN1O15353 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC23.3■■□□□ 1.32
FOXN1O15353 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
FOXN1O15353 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
FOXN1O15353 AL031985.4-201ENST00000642138 673 ntBASIC23.3■■□□□ 1.32
FOXN1O15353 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
FOXN1O15353 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
FOXN1O15353 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC23.3■■□□□ 1.32
FOXN1O15353 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
FOXN1O15353 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC23.3■■□□□ 1.32
FOXN1O15353 AC116050.2-201ENST00000612102 1779 ntBASIC23.29■■□□□ 1.32
FOXN1O15353 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
FOXN1O15353 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
FOXN1O15353 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
FOXN1O15353 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
FOXN1O15353 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
FOXN1O15353 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
FOXN1O15353 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.29■■□□□ 1.32
FOXN1O15353 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
FOXN1O15353 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
FOXN1O15353 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
FOXN1O15353 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.29■■□□□ 1.32
FOXN1O15353 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
FOXN1O15353 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
FOXN1O15353 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
FOXN1O15353 AL359075.1-203ENST00000462729 1002 ntBASIC23.29■■□□□ 1.32
FOXN1O15353 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC23.29■■□□□ 1.32
FOXN1O15353 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC23.29■■□□□ 1.32
FOXN1O15353 AL391422.3-201ENST00000603791 2761 ntBASIC23.29■■□□□ 1.32
FOXN1O15353 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
FOXN1O15353 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
FOXN1O15353 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms