Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 TSPY7P-201ENST00000431358 1114 ntBASIC19.97■□□□□ 0.79
CBX4O00257 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.97■□□□□ 0.79
CBX4O00257 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CBX4O00257 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.97■□□□□ 0.79
CBX4O00257 AP001412.1-201ENST00000608405 714 ntBASIC19.97■□□□□ 0.79
CBX4O00257 AL049637.2-201ENST00000641778 930 ntBASIC19.97■□□□□ 0.79
CBX4O00257 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
CBX4O00257 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CBX4O00257 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CBX4O00257 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.96■□□□□ 0.79
CBX4O00257 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CBX4O00257 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CBX4O00257 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CBX4O00257 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CBX4O00257 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.96■□□□□ 0.79
CBX4O00257 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.96■□□□□ 0.79
CBX4O00257 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.96■□□□□ 0.79
CBX4O00257 C1QL1P1-201ENST00000568105 661 ntBASIC19.96■□□□□ 0.79
CBX4O00257 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.96■□□□□ 0.79
CBX4O00257 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.96■□□□□ 0.79
CBX4O00257 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CBX4O00257 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CBX4O00257 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CBX4O00257 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CBX4O00257 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CBX4O00257 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.96■□□□□ 0.79
CBX4O00257 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CBX4O00257 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CBX4O00257 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.95■□□□□ 0.79
CBX4O00257 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CBX4O00257 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.95■□□□□ 0.78
CBX4O00257 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CBX4O00257 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.95■□□□□ 0.78
CBX4O00257 AC073130.3-201ENST00000624389 2278 ntBASIC19.95■□□□□ 0.78
CBX4O00257 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CBX4O00257 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CBX4O00257 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CBX4O00257 MIR1224-201ENST00000408193 85 ntBASIC19.95■□□□□ 0.78
CBX4O00257 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.95■□□□□ 0.78
CBX4O00257 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.95■□□□□ 0.78
CBX4O00257 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.95■□□□□ 0.78
CBX4O00257 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CBX4O00257 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CBX4O00257 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.95■□□□□ 0.78
CBX4O00257 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CBX4O00257 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CBX4O00257 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.94■□□□□ 0.78
CBX4O00257 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CBX4O00257 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.94■□□□□ 0.78
CBX4O00257 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CBX4O00257 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
CBX4O00257 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CBX4O00257 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CBX4O00257 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.94■□□□□ 0.78
CBX4O00257 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CBX4O00257 AC113410.3-201ENST00000623366 203 ntBASIC19.94■□□□□ 0.78
CBX4O00257 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CBX4O00257 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CBX4O00257 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.94■□□□□ 0.78
CBX4O00257 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CBX4O00257 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.93■□□□□ 0.78
CBX4O00257 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.93■□□□□ 0.78
CBX4O00257 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CBX4O00257 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CBX4O00257 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CBX4O00257 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CBX4O00257 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.93■□□□□ 0.78
CBX4O00257 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CBX4O00257 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CBX4O00257 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CBX4O00257 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.93■□□□□ 0.78
CBX4O00257 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.93■□□□□ 0.78
CBX4O00257 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CBX4O00257 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.93■□□□□ 0.78
CBX4O00257 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CBX4O00257 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.93■□□□□ 0.78
CBX4O00257 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.93■□□□□ 0.78
CBX4O00257 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CBX4O00257 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.93■□□□□ 0.78
CBX4O00257 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CBX4O00257 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CBX4O00257 KRT8P8-201ENST00000434750 1448 ntBASIC19.93■□□□□ 0.78
CBX4O00257 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CBX4O00257 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CBX4O00257 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CBX4O00257 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CBX4O00257 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CBX4O00257 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CBX4O00257 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CBX4O00257 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.92■□□□□ 0.78
CBX4O00257 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CBX4O00257 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.92■□□□□ 0.78
CBX4O00257 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms