Protein–RNA interactions for Protein: Q9Y5I1

PCDHA11, Protocadherin alpha-11, humanhuman

Predictions only

Length 949 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11Q9Y5I1 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC28.19■■■□□ 2.1
PCDHA11Q9Y5I1 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC28.19■■■□□ 2.1
PCDHA11Q9Y5I1 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
PCDHA11Q9Y5I1 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
PCDHA11Q9Y5I1 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
PCDHA11Q9Y5I1 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
PCDHA11Q9Y5I1 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC28.16■■■□□ 2.1
PCDHA11Q9Y5I1 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCDHA11Q9Y5I1 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCDHA11Q9Y5I1 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
PCDHA11Q9Y5I1 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA11Q9Y5I1 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC28.15■■■□□ 2.1
PCDHA11Q9Y5I1 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA11Q9Y5I1 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA11Q9Y5I1 U85056.1-201ENST00000616429 682 ntBASIC28.14■■■□□ 2.1
PCDHA11Q9Y5I1 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC28.14■■■□□ 2.09
PCDHA11Q9Y5I1 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PCDHA11Q9Y5I1 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PCDHA11Q9Y5I1 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHA11Q9Y5I1 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC28.11■■■□□ 2.09
PCDHA11Q9Y5I1 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
PCDHA11Q9Y5I1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC28.11■■■□□ 2.09
PCDHA11Q9Y5I1 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHA11Q9Y5I1 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC28.11■■■□□ 2.09
PCDHA11Q9Y5I1 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC28.1■■■□□ 2.09
PCDHA11Q9Y5I1 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PCDHA11Q9Y5I1 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC28.1■■■□□ 2.09
PCDHA11Q9Y5I1 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC28.09■■■□□ 2.09
PCDHA11Q9Y5I1 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
PCDHA11Q9Y5I1 AC120057.4-201ENST00000624722 1615 ntBASIC28.07■■■□□ 2.08
PCDHA11Q9Y5I1 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
PCDHA11Q9Y5I1 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
PCDHA11Q9Y5I1 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC28.07■■■□□ 2.08
PCDHA11Q9Y5I1 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC28.06■■■□□ 2.08
PCDHA11Q9Y5I1 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCDHA11Q9Y5I1 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCDHA11Q9Y5I1 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCDHA11Q9Y5I1 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
PCDHA11Q9Y5I1 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC28.04■■■□□ 2.08
PCDHA11Q9Y5I1 TSPY13P-201ENST00000338964 914 ntBASIC28.04■■■□□ 2.08
PCDHA11Q9Y5I1 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
PCDHA11Q9Y5I1 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC28.04■■■□□ 2.08
PCDHA11Q9Y5I1 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
PCDHA11Q9Y5I1 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC28.04■■■□□ 2.08
PCDHA11Q9Y5I1 GFER-205ENST00000569451 517 ntTSL 5 BASIC28.03■■■□□ 2.08
PCDHA11Q9Y5I1 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC28.03■■■□□ 2.08
PCDHA11Q9Y5I1 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
PCDHA11Q9Y5I1 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC28.02■■■□□ 2.08
PCDHA11Q9Y5I1 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
PCDHA11Q9Y5I1 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
PCDHA11Q9Y5I1 CHST11-203ENST00000547956 936 ntTSL 2 BASIC28.02■■■□□ 2.08
PCDHA11Q9Y5I1 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC28.02■■■□□ 2.08
PCDHA11Q9Y5I1 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
PCDHA11Q9Y5I1 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.08
PCDHA11Q9Y5I1 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
PCDHA11Q9Y5I1 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC28.01■■■□□ 2.07
PCDHA11Q9Y5I1 AC060814.1-201ENST00000554326 538 ntBASIC28.01■■■□□ 2.07
PCDHA11Q9Y5I1 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC28.01■■■□□ 2.07
PCDHA11Q9Y5I1 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
PCDHA11Q9Y5I1 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC28■■■□□ 2.07
PCDHA11Q9Y5I1 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC28■■■□□ 2.07
PCDHA11Q9Y5I1 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC28■■■□□ 2.07
PCDHA11Q9Y5I1 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
PCDHA11Q9Y5I1 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
PCDHA11Q9Y5I1 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
PCDHA11Q9Y5I1 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
PCDHA11Q9Y5I1 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
PCDHA11Q9Y5I1 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC27.98■■■□□ 2.07
PCDHA11Q9Y5I1 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
PCDHA11Q9Y5I1 AC004987.1-201ENST00000428627 508 ntBASIC27.98■■■□□ 2.07
PCDHA11Q9Y5I1 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC27.98■■■□□ 2.07
PCDHA11Q9Y5I1 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC27.98■■■□□ 2.07
PCDHA11Q9Y5I1 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC27.97■■■□□ 2.07
PCDHA11Q9Y5I1 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
PCDHA11Q9Y5I1 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
PCDHA11Q9Y5I1 KRT18P60-201ENST00000312876 1297 ntBASIC27.97■■■□□ 2.07
PCDHA11Q9Y5I1 ATP5G2P3-201ENST00000429083 425 ntBASIC27.97■■■□□ 2.07
PCDHA11Q9Y5I1 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
PCDHA11Q9Y5I1 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
PCDHA11Q9Y5I1 RARRES2P1-201ENST00000474487 481 ntBASIC27.96■■■□□ 2.07
PCDHA11Q9Y5I1 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC27.96■■■□□ 2.07
PCDHA11Q9Y5I1 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC27.96■■■□□ 2.07
PCDHA11Q9Y5I1 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
PCDHA11Q9Y5I1 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
PCDHA11Q9Y5I1 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC27.95■■■□□ 2.07
PCDHA11Q9Y5I1 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC27.94■■■□□ 2.06
PCDHA11Q9Y5I1 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
PCDHA11Q9Y5I1 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
PCDHA11Q9Y5I1 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC27.93■■■□□ 2.06
PCDHA11Q9Y5I1 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC27.93■■■□□ 2.06
PCDHA11Q9Y5I1 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
PCDHA11Q9Y5I1 AC010864.1-201ENST00000609407 1511 ntBASIC27.92■■■□□ 2.06
PCDHA11Q9Y5I1 GUK1-208ENST00000366728 842 ntTSL 2 BASIC27.92■■■□□ 2.06
PCDHA11Q9Y5I1 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
PCDHA11Q9Y5I1 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC27.92■■■□□ 2.06
PCDHA11Q9Y5I1 AC148477.6-201ENST00000623746 465 ntBASIC27.92■■■□□ 2.06
PCDHA11Q9Y5I1 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC27.91■■■□□ 2.06
PCDHA11Q9Y5I1 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC27.91■■■□□ 2.06
PCDHA11Q9Y5I1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC27.9■■■□□ 2.06
PCDHA11Q9Y5I1 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC27.9■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms