Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
PCDHGA3Q9Y5H0 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHGA3Q9Y5H0 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
PCDHGA3Q9Y5H0 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHGA3Q9Y5H0 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC24.82■■□□□ 1.56
PCDHGA3Q9Y5H0 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC24.82■■□□□ 1.56
PCDHGA3Q9Y5H0 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC24.82■■□□□ 1.56
PCDHGA3Q9Y5H0 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHGA3Q9Y5H0 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA3Q9Y5H0 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA3Q9Y5H0 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA3Q9Y5H0 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA3Q9Y5H0 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.81■■□□□ 1.56
PCDHGA3Q9Y5H0 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA3Q9Y5H0 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA3Q9Y5H0 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA3Q9Y5H0 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA3Q9Y5H0 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA3Q9Y5H0 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.8■■□□□ 1.56
PCDHGA3Q9Y5H0 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC24.8■■□□□ 1.56
PCDHGA3Q9Y5H0 SRP68-213ENST00000629930 165 ntTSL 5 BASIC24.8■■□□□ 1.56
PCDHGA3Q9Y5H0 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHGA3Q9Y5H0 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
PCDHGA3Q9Y5H0 AC010864.1-201ENST00000609407 1511 ntBASIC24.78■■□□□ 1.56
PCDHGA3Q9Y5H0 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC24.78■■□□□ 1.56
PCDHGA3Q9Y5H0 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PCDHGA3Q9Y5H0 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC24.77■■□□□ 1.56
PCDHGA3Q9Y5H0 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PCDHGA3Q9Y5H0 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.77■■□□□ 1.56
PCDHGA3Q9Y5H0 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PCDHGA3Q9Y5H0 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC24.76■■□□□ 1.55
PCDHGA3Q9Y5H0 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHGA3Q9Y5H0 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHGA3Q9Y5H0 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHGA3Q9Y5H0 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHGA3Q9Y5H0 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.75■■□□□ 1.55
PCDHGA3Q9Y5H0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
PCDHGA3Q9Y5H0 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
PCDHGA3Q9Y5H0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
PCDHGA3Q9Y5H0 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHGA3Q9Y5H0 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHGA3Q9Y5H0 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHGA3Q9Y5H0 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHGA3Q9Y5H0 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
PCDHGA3Q9Y5H0 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHGA3Q9Y5H0 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC24.71■■□□□ 1.55
PCDHGA3Q9Y5H0 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
PCDHGA3Q9Y5H0 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PCDHGA3Q9Y5H0 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
PCDHGA3Q9Y5H0 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC24.7■■□□□ 1.54
PCDHGA3Q9Y5H0 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHGA3Q9Y5H0 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
PCDHGA3Q9Y5H0 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.69■■□□□ 1.54
PCDHGA3Q9Y5H0 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.67■■□□□ 1.54
PCDHGA3Q9Y5H0 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHGA3Q9Y5H0 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHGA3Q9Y5H0 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.66■■□□□ 1.54
PCDHGA3Q9Y5H0 RARRES2P2-201ENST00000394842 485 ntBASIC24.66■■□□□ 1.54
PCDHGA3Q9Y5H0 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
PCDHGA3Q9Y5H0 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC24.66■■□□□ 1.54
PCDHGA3Q9Y5H0 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHGA3Q9Y5H0 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
PCDHGA3Q9Y5H0 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHGA3Q9Y5H0 TPT1-202ENST00000379055 948 ntTSL 2 BASIC24.64■■□□□ 1.54
PCDHGA3Q9Y5H0 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHGA3Q9Y5H0 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24.63■■□□□ 1.53
PCDHGA3Q9Y5H0 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHGA3Q9Y5H0 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC24.63■■□□□ 1.53
PCDHGA3Q9Y5H0 GPX1-201ENST00000419349 1106 ntBASIC24.63■■□□□ 1.53
PCDHGA3Q9Y5H0 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHGA3Q9Y5H0 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHGA3Q9Y5H0 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHGA3Q9Y5H0 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHGA3Q9Y5H0 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
PCDHGA3Q9Y5H0 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHGA3Q9Y5H0 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24.62■■□□□ 1.53
PCDHGA3Q9Y5H0 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHGA3Q9Y5H0 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHGA3Q9Y5H0 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHGA3Q9Y5H0 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC24.61■■□□□ 1.53
PCDHGA3Q9Y5H0 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHGA3Q9Y5H0 RNF126P1-201ENST00000567452 1320 ntBASIC24.61■■□□□ 1.53
PCDHGA3Q9Y5H0 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHGA3Q9Y5H0 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
PCDHGA3Q9Y5H0 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHGA3Q9Y5H0 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHGA3Q9Y5H0 AC008813.1-201ENST00000536597 885 ntBASIC24.59■■□□□ 1.53
PCDHGA3Q9Y5H0 ABHD17AP5-201ENST00000580133 923 ntBASIC24.59■■□□□ 1.53
PCDHGA3Q9Y5H0 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHGA3Q9Y5H0 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC24.58■■□□□ 1.53
PCDHGA3Q9Y5H0 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHGA3Q9Y5H0 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHGA3Q9Y5H0 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
PCDHGA3Q9Y5H0 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC24.57■■□□□ 1.52
PCDHGA3Q9Y5H0 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHGA3Q9Y5H0 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHGA3Q9Y5H0 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.55■■□□□ 1.52
PCDHGA3Q9Y5H0 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
PCDHGA3Q9Y5H0 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC24.54■■□□□ 1.52
PCDHGA3Q9Y5H0 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms