Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CUEDC1Q9NWM3 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
CUEDC1Q9NWM3 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
CUEDC1Q9NWM3 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.83■■□□□ 1.56
CUEDC1Q9NWM3 AC135983.2-203ENST00000454486 1613 ntBASIC24.83■■□□□ 1.56
CUEDC1Q9NWM3 WHAMMP2-203ENST00000563942 1603 ntBASIC24.82■■□□□ 1.56
CUEDC1Q9NWM3 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.81■■□□□ 1.56
CUEDC1Q9NWM3 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.8■■□□□ 1.56
CUEDC1Q9NWM3 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CUEDC1Q9NWM3 AP004833.2-201ENST00000532228 1454 ntBASIC24.8■■□□□ 1.56
CUEDC1Q9NWM3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.79■■□□□ 1.56
CUEDC1Q9NWM3 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CUEDC1Q9NWM3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CUEDC1Q9NWM3 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
CUEDC1Q9NWM3 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.79■■□□□ 1.56
CUEDC1Q9NWM3 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
CUEDC1Q9NWM3 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CUEDC1Q9NWM3 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CUEDC1Q9NWM3 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24.78■■□□□ 1.56
CUEDC1Q9NWM3 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CUEDC1Q9NWM3 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.77■■□□□ 1.56
CUEDC1Q9NWM3 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
CUEDC1Q9NWM3 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CUEDC1Q9NWM3 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.76■■□□□ 1.55
CUEDC1Q9NWM3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.76■■□□□ 1.55
CUEDC1Q9NWM3 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.76■■□□□ 1.55
CUEDC1Q9NWM3 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.75■■□□□ 1.55
CUEDC1Q9NWM3 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC24.75■■□□□ 1.55
CUEDC1Q9NWM3 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
CUEDC1Q9NWM3 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CUEDC1Q9NWM3 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
CUEDC1Q9NWM3 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
CUEDC1Q9NWM3 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CUEDC1Q9NWM3 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CUEDC1Q9NWM3 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CUEDC1Q9NWM3 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
CUEDC1Q9NWM3 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC24.74■■□□□ 1.55
CUEDC1Q9NWM3 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
CUEDC1Q9NWM3 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC24.73■■□□□ 1.55
CUEDC1Q9NWM3 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CUEDC1Q9NWM3 MIR4449-201ENST00000578365 66 ntBASIC24.73■■□□□ 1.55
CUEDC1Q9NWM3 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
CUEDC1Q9NWM3 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CUEDC1Q9NWM3 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
CUEDC1Q9NWM3 AC100797.4-201ENST00000631653 1827 ntBASIC24.72■■□□□ 1.55
CUEDC1Q9NWM3 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CUEDC1Q9NWM3 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CUEDC1Q9NWM3 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.71■■□□□ 1.55
CUEDC1Q9NWM3 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CUEDC1Q9NWM3 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.71■■□□□ 1.55
CUEDC1Q9NWM3 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC24.7■■□□□ 1.55
CUEDC1Q9NWM3 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC24.7■■□□□ 1.55
CUEDC1Q9NWM3 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
CUEDC1Q9NWM3 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CUEDC1Q9NWM3 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CUEDC1Q9NWM3 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CUEDC1Q9NWM3 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.69■■□□□ 1.54
CUEDC1Q9NWM3 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC24.69■■□□□ 1.54
CUEDC1Q9NWM3 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
CUEDC1Q9NWM3 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CUEDC1Q9NWM3 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUEDC1Q9NWM3 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUEDC1Q9NWM3 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.68■■□□□ 1.54
CUEDC1Q9NWM3 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.68■■□□□ 1.54
CUEDC1Q9NWM3 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUEDC1Q9NWM3 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUEDC1Q9NWM3 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.66■■□□□ 1.54
CUEDC1Q9NWM3 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC24.66■■□□□ 1.54
CUEDC1Q9NWM3 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC24.66■■□□□ 1.54
CUEDC1Q9NWM3 LINC01971-201ENST00000617888 1048 ntBASIC24.66■■□□□ 1.54
CUEDC1Q9NWM3 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC24.66■■□□□ 1.54
CUEDC1Q9NWM3 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CUEDC1Q9NWM3 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CUEDC1Q9NWM3 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CUEDC1Q9NWM3 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.65■■□□□ 1.54
CUEDC1Q9NWM3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CUEDC1Q9NWM3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.54
CUEDC1Q9NWM3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.54
CUEDC1Q9NWM3 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CUEDC1Q9NWM3 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.64■■□□□ 1.53
CUEDC1Q9NWM3 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC24.63■■□□□ 1.53
CUEDC1Q9NWM3 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC24.62■■□□□ 1.53
CUEDC1Q9NWM3 DRD5P2-201ENST00000421395 2012 ntBASIC24.61■■□□□ 1.53
CUEDC1Q9NWM3 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CUEDC1Q9NWM3 MIR639-201ENST00000384974 98 ntBASIC24.61■■□□□ 1.53
CUEDC1Q9NWM3 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CUEDC1Q9NWM3 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24.61■■□□□ 1.53
CUEDC1Q9NWM3 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CUEDC1Q9NWM3 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
CUEDC1Q9NWM3 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC24.6■■□□□ 1.53
CUEDC1Q9NWM3 RPS2-202ENST00000526522 924 ntTSL 2 BASIC24.6■■□□□ 1.53
CUEDC1Q9NWM3 DUX4L11-201ENST00000611504 1267 ntBASIC24.6■■□□□ 1.53
CUEDC1Q9NWM3 DUX4L12-201ENST00000614593 1267 ntBASIC24.6■■□□□ 1.53
CUEDC1Q9NWM3 DUX4L14-201ENST00000621227 1267 ntBASIC24.6■■□□□ 1.53
CUEDC1Q9NWM3 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CUEDC1Q9NWM3 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.59■■□□□ 1.53
CUEDC1Q9NWM3 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC24.59■■□□□ 1.53
CUEDC1Q9NWM3 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CUEDC1Q9NWM3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUEDC1Q9NWM3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms