Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
RPAP1Q9BWH6 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
RPAP1Q9BWH6 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC31.4■■■□□ 2.62
RPAP1Q9BWH6 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
RPAP1Q9BWH6 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC31.39■■■□□ 2.62
RPAP1Q9BWH6 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
RPAP1Q9BWH6 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC31.39■■■□□ 2.62
RPAP1Q9BWH6 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
RPAP1Q9BWH6 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
RPAP1Q9BWH6 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
RPAP1Q9BWH6 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC31.38■■■□□ 2.61
RPAP1Q9BWH6 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
RPAP1Q9BWH6 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
RPAP1Q9BWH6 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
RPAP1Q9BWH6 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC31.36■■■□□ 2.61
RPAP1Q9BWH6 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC31.36■■■□□ 2.61
RPAP1Q9BWH6 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
RPAP1Q9BWH6 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.35■■■□□ 2.61
RPAP1Q9BWH6 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.35■■■□□ 2.61
RPAP1Q9BWH6 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC31.34■■■□□ 2.61
RPAP1Q9BWH6 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.33■■■□□ 2.61
RPAP1Q9BWH6 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC31.33■■■□□ 2.61
RPAP1Q9BWH6 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
RPAP1Q9BWH6 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC31.31■■■□□ 2.6
RPAP1Q9BWH6 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RPAP1Q9BWH6 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
RPAP1Q9BWH6 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
RPAP1Q9BWH6 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RPAP1Q9BWH6 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
RPAP1Q9BWH6 METRNL-202ENST00000570778 967 ntTSL 5 BASIC31.29■■■□□ 2.6
RPAP1Q9BWH6 CHML-204ENST00000638121 920 ntTSL 2 BASIC31.29■■■□□ 2.6
RPAP1Q9BWH6 HES6-205ENST00000409356 528 ntTSL 2 BASIC31.28■■■□□ 2.6
RPAP1Q9BWH6 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.28■■■□□ 2.6
RPAP1Q9BWH6 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
RPAP1Q9BWH6 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
RPAP1Q9BWH6 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC31.27■■■□□ 2.6
RPAP1Q9BWH6 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
RPAP1Q9BWH6 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC31.25■■■□□ 2.59
RPAP1Q9BWH6 ABHD17AP3-201ENST00000503096 1137 ntBASIC31.25■■■□□ 2.59
RPAP1Q9BWH6 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
RPAP1Q9BWH6 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RPAP1Q9BWH6 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
RPAP1Q9BWH6 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RPAP1Q9BWH6 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RPAP1Q9BWH6 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
RPAP1Q9BWH6 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC31.23■■■□□ 2.59
RPAP1Q9BWH6 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
RPAP1Q9BWH6 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC31.21■■■□□ 2.59
RPAP1Q9BWH6 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
RPAP1Q9BWH6 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
RPAP1Q9BWH6 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC31.2■■■□□ 2.59
RPAP1Q9BWH6 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.58
RPAP1Q9BWH6 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC31.2■■■□□ 2.58
RPAP1Q9BWH6 LINC00273-201ENST00000539813 1452 ntBASIC31.2■■■□□ 2.58
RPAP1Q9BWH6 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.19■■■□□ 2.58
RPAP1Q9BWH6 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
RPAP1Q9BWH6 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
RPAP1Q9BWH6 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
RPAP1Q9BWH6 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC31.18■■■□□ 2.58
RPAP1Q9BWH6 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC31.18■■■□□ 2.58
RPAP1Q9BWH6 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
RPAP1Q9BWH6 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
RPAP1Q9BWH6 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
RPAP1Q9BWH6 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC31.16■■■□□ 2.58
RPAP1Q9BWH6 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC31.16■■■□□ 2.58
RPAP1Q9BWH6 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC31.16■■■□□ 2.58
RPAP1Q9BWH6 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
RPAP1Q9BWH6 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
RPAP1Q9BWH6 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
RPAP1Q9BWH6 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC31.15■■■□□ 2.58
RPAP1Q9BWH6 SRP68-213ENST00000629930 165 ntTSL 5 BASIC31.15■■■□□ 2.58
RPAP1Q9BWH6 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
RPAP1Q9BWH6 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC31.14■■■□□ 2.58
RPAP1Q9BWH6 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
RPAP1Q9BWH6 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC31.13■■■□□ 2.57
RPAP1Q9BWH6 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
RPAP1Q9BWH6 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC31.13■■■□□ 2.57
RPAP1Q9BWH6 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC31.13■■■□□ 2.57
RPAP1Q9BWH6 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC31.13■■■□□ 2.57
RPAP1Q9BWH6 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC31.12■■■□□ 2.57
RPAP1Q9BWH6 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC31.12■■■□□ 2.57
RPAP1Q9BWH6 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC31.12■■■□□ 2.57
RPAP1Q9BWH6 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
RPAP1Q9BWH6 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
RPAP1Q9BWH6 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
RPAP1Q9BWH6 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC31.1■■■□□ 2.57
RPAP1Q9BWH6 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC31.1■■■□□ 2.57
RPAP1Q9BWH6 AL139393.2-201ENST00000608721 2025 ntBASIC31.1■■■□□ 2.57
RPAP1Q9BWH6 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
RPAP1Q9BWH6 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
RPAP1Q9BWH6 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
RPAP1Q9BWH6 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
RPAP1Q9BWH6 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC31.09■■■□□ 2.57
RPAP1Q9BWH6 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
RPAP1Q9BWH6 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
RPAP1Q9BWH6 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
RPAP1Q9BWH6 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
RPAP1Q9BWH6 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
RPAP1Q9BWH6 AC127502.1-201ENST00000399971 1502 ntBASIC31.09■■■□□ 2.57
RPAP1Q9BWH6 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms