Protein–RNA interactions for Protein: Q8NDX5

PHC3, Polyhomeotic-like protein 3, humanhuman

Predictions only

Length 983 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3Q8NDX5 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PHC3Q8NDX5 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PHC3Q8NDX5 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
PHC3Q8NDX5 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.42■■□□□ 1.66
PHC3Q8NDX5 ABHD17AP4-201ENST00000411545 909 ntBASIC25.42■■□□□ 1.66
PHC3Q8NDX5 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.42■■□□□ 1.66
PHC3Q8NDX5 AC127502.1-201ENST00000399971 1502 ntBASIC25.42■■□□□ 1.66
PHC3Q8NDX5 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PHC3Q8NDX5 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
PHC3Q8NDX5 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC25.4■■□□□ 1.66
PHC3Q8NDX5 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
PHC3Q8NDX5 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
PHC3Q8NDX5 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.39■■□□□ 1.65
PHC3Q8NDX5 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
PHC3Q8NDX5 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PHC3Q8NDX5 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PHC3Q8NDX5 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
PHC3Q8NDX5 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PHC3Q8NDX5 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.37■■□□□ 1.65
PHC3Q8NDX5 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.37■■□□□ 1.65
PHC3Q8NDX5 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC25.37■■□□□ 1.65
PHC3Q8NDX5 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
PHC3Q8NDX5 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
PHC3Q8NDX5 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
PHC3Q8NDX5 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC25.36■■□□□ 1.65
PHC3Q8NDX5 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PHC3Q8NDX5 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PHC3Q8NDX5 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PHC3Q8NDX5 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PHC3Q8NDX5 ZNRF2P2-203ENST00000454624 420 ntBASIC25.34■■□□□ 1.65
PHC3Q8NDX5 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PHC3Q8NDX5 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PHC3Q8NDX5 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
PHC3Q8NDX5 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC25.33■■□□□ 1.65
PHC3Q8NDX5 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
PHC3Q8NDX5 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PHC3Q8NDX5 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC25.32■■□□□ 1.64
PHC3Q8NDX5 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
PHC3Q8NDX5 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.32■■□□□ 1.64
PHC3Q8NDX5 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
PHC3Q8NDX5 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
PHC3Q8NDX5 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PHC3Q8NDX5 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PHC3Q8NDX5 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PHC3Q8NDX5 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PHC3Q8NDX5 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
PHC3Q8NDX5 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PHC3Q8NDX5 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
PHC3Q8NDX5 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
PHC3Q8NDX5 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PHC3Q8NDX5 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
PHC3Q8NDX5 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PHC3Q8NDX5 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.3■■□□□ 1.64
PHC3Q8NDX5 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PHC3Q8NDX5 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PHC3Q8NDX5 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PHC3Q8NDX5 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PHC3Q8NDX5 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
PHC3Q8NDX5 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
PHC3Q8NDX5 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PHC3Q8NDX5 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.28■■□□□ 1.64
PHC3Q8NDX5 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.27■■□□□ 1.64
PHC3Q8NDX5 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC25.27■■□□□ 1.64
PHC3Q8NDX5 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.27■■□□□ 1.64
PHC3Q8NDX5 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PHC3Q8NDX5 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PHC3Q8NDX5 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC25.25■■□□□ 1.63
PHC3Q8NDX5 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.25■■□□□ 1.63
PHC3Q8NDX5 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC25.25■■□□□ 1.63
PHC3Q8NDX5 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
PHC3Q8NDX5 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PHC3Q8NDX5 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PHC3Q8NDX5 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
PHC3Q8NDX5 CALM3-209ENST00000597743 577 ntTSL 4 BASIC25.24■■□□□ 1.63
PHC3Q8NDX5 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PHC3Q8NDX5 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PHC3Q8NDX5 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PHC3Q8NDX5 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
PHC3Q8NDX5 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PHC3Q8NDX5 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PHC3Q8NDX5 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PHC3Q8NDX5 MIR7108-201ENST00000614319 87 ntBASIC25.22■■□□□ 1.63
PHC3Q8NDX5 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
PHC3Q8NDX5 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PHC3Q8NDX5 LINC00273-201ENST00000539813 1452 ntBASIC25.21■■□□□ 1.63
PHC3Q8NDX5 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PHC3Q8NDX5 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PHC3Q8NDX5 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC25.21■■□□□ 1.63
PHC3Q8NDX5 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.2■■□□□ 1.63
PHC3Q8NDX5 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
PHC3Q8NDX5 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
PHC3Q8NDX5 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.19■■□□□ 1.62
PHC3Q8NDX5 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PHC3Q8NDX5 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.19■■□□□ 1.62
PHC3Q8NDX5 AL139393.2-201ENST00000608721 2025 ntBASIC25.19■■□□□ 1.62
PHC3Q8NDX5 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PHC3Q8NDX5 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.18■■□□□ 1.62
PHC3Q8NDX5 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PHC3Q8NDX5 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.17■■□□□ 1.62
PHC3Q8NDX5 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms