Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLRN3Q8NCR9 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CLRN3Q8NCR9 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLRN3Q8NCR9 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.59■□□□□ 0.89
CLRN3Q8NCR9 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLRN3Q8NCR9 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.59■□□□□ 0.89
CLRN3Q8NCR9 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLRN3Q8NCR9 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLRN3Q8NCR9 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CLRN3Q8NCR9 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC20.58■□□□□ 0.89
CLRN3Q8NCR9 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLRN3Q8NCR9 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.58■□□□□ 0.89
CLRN3Q8NCR9 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLRN3Q8NCR9 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CLRN3Q8NCR9 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CLRN3Q8NCR9 AC133561.1-201ENST00000568600 2415 ntBASIC20.58■□□□□ 0.88
CLRN3Q8NCR9 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CLRN3Q8NCR9 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.57■□□□□ 0.88
CLRN3Q8NCR9 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.57■□□□□ 0.88
CLRN3Q8NCR9 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CLRN3Q8NCR9 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLRN3Q8NCR9 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLRN3Q8NCR9 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.56■□□□□ 0.88
CLRN3Q8NCR9 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.56■□□□□ 0.88
CLRN3Q8NCR9 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CLRN3Q8NCR9 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC20.56■□□□□ 0.88
CLRN3Q8NCR9 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.56■□□□□ 0.88
CLRN3Q8NCR9 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.56■□□□□ 0.88
CLRN3Q8NCR9 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.55■□□□□ 0.88
CLRN3Q8NCR9 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLRN3Q8NCR9 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLRN3Q8NCR9 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CLRN3Q8NCR9 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLRN3Q8NCR9 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.52■□□□□ 0.87
CLRN3Q8NCR9 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
CLRN3Q8NCR9 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLRN3Q8NCR9 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLRN3Q8NCR9 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
CLRN3Q8NCR9 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CLRN3Q8NCR9 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLRN3Q8NCR9 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLRN3Q8NCR9 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLRN3Q8NCR9 AL139393.2-201ENST00000608721 2025 ntBASIC20.5■□□□□ 0.87
CLRN3Q8NCR9 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC20.5■□□□□ 0.87
CLRN3Q8NCR9 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CLRN3Q8NCR9 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CLRN3Q8NCR9 CLDN5-201ENST00000403084 2357 ntBASIC20.5■□□□□ 0.87
CLRN3Q8NCR9 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.49■□□□□ 0.87
CLRN3Q8NCR9 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLRN3Q8NCR9 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLRN3Q8NCR9 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLRN3Q8NCR9 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
CLRN3Q8NCR9 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLRN3Q8NCR9 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.48■□□□□ 0.87
CLRN3Q8NCR9 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.48■□□□□ 0.87
CLRN3Q8NCR9 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLRN3Q8NCR9 AC012676.1-201ENST00000574705 1949 ntBASIC20.47■□□□□ 0.87
CLRN3Q8NCR9 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLRN3Q8NCR9 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLRN3Q8NCR9 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLRN3Q8NCR9 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLRN3Q8NCR9 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLRN3Q8NCR9 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLRN3Q8NCR9 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CLRN3Q8NCR9 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.46■□□□□ 0.87
CLRN3Q8NCR9 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLRN3Q8NCR9 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
CLRN3Q8NCR9 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.45■□□□□ 0.86
CLRN3Q8NCR9 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLRN3Q8NCR9 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLRN3Q8NCR9 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CLRN3Q8NCR9 AL135925.1-201ENST00000605920 1701 ntBASIC20.44■□□□□ 0.86
CLRN3Q8NCR9 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.43■□□□□ 0.86
CLRN3Q8NCR9 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLRN3Q8NCR9 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLRN3Q8NCR9 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CLRN3Q8NCR9 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLRN3Q8NCR9 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLRN3Q8NCR9 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CLRN3Q8NCR9 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CLRN3Q8NCR9 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLRN3Q8NCR9 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLRN3Q8NCR9 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLRN3Q8NCR9 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLRN3Q8NCR9 BX255925.1-201ENST00000566954 1854 ntBASIC20.41■□□□□ 0.86
CLRN3Q8NCR9 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLRN3Q8NCR9 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLRN3Q8NCR9 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLRN3Q8NCR9 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CLRN3Q8NCR9 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLRN3Q8NCR9 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLRN3Q8NCR9 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLRN3Q8NCR9 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLRN3Q8NCR9 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLRN3Q8NCR9 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
CLRN3Q8NCR9 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLRN3Q8NCR9 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLRN3Q8NCR9 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLRN3Q8NCR9 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLRN3Q8NCR9 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms