Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC25.25■■□□□ 1.63
VRK3Q8IV63 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
VRK3Q8IV63 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
VRK3Q8IV63 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
VRK3Q8IV63 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.24■■□□□ 1.63
VRK3Q8IV63 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
VRK3Q8IV63 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
VRK3Q8IV63 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.24■■□□□ 1.63
VRK3Q8IV63 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC25.24■■□□□ 1.63
VRK3Q8IV63 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
VRK3Q8IV63 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.23■■□□□ 1.63
VRK3Q8IV63 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
VRK3Q8IV63 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
VRK3Q8IV63 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
VRK3Q8IV63 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.22■■□□□ 1.63
VRK3Q8IV63 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
VRK3Q8IV63 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC25.22■■□□□ 1.63
VRK3Q8IV63 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
VRK3Q8IV63 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
VRK3Q8IV63 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
VRK3Q8IV63 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.2■■□□□ 1.62
VRK3Q8IV63 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.62
VRK3Q8IV63 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.2■■□□□ 1.62
VRK3Q8IV63 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
VRK3Q8IV63 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
VRK3Q8IV63 AC100797.4-201ENST00000631653 1827 ntBASIC25.19■■□□□ 1.62
VRK3Q8IV63 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.19■■□□□ 1.62
VRK3Q8IV63 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC25.18■■□□□ 1.62
VRK3Q8IV63 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
VRK3Q8IV63 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
VRK3Q8IV63 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
VRK3Q8IV63 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
VRK3Q8IV63 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
VRK3Q8IV63 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
VRK3Q8IV63 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC25.16■■□□□ 1.62
VRK3Q8IV63 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
VRK3Q8IV63 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
VRK3Q8IV63 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
VRK3Q8IV63 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
VRK3Q8IV63 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
VRK3Q8IV63 ABHD17AP4-201ENST00000411545 909 ntBASIC25.14■■□□□ 1.62
VRK3Q8IV63 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
VRK3Q8IV63 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
VRK3Q8IV63 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
VRK3Q8IV63 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC25.14■■□□□ 1.61
VRK3Q8IV63 DRD5P2-201ENST00000421395 2012 ntBASIC25.13■■□□□ 1.61
VRK3Q8IV63 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC25.13■■□□□ 1.61
VRK3Q8IV63 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
VRK3Q8IV63 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC25.13■■□□□ 1.61
VRK3Q8IV63 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
VRK3Q8IV63 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.12■■□□□ 1.61
VRK3Q8IV63 ZNRF2P2-203ENST00000454624 420 ntBASIC25.12■■□□□ 1.61
VRK3Q8IV63 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.12■■□□□ 1.61
VRK3Q8IV63 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC25.12■■□□□ 1.61
VRK3Q8IV63 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
VRK3Q8IV63 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC25.11■■□□□ 1.61
VRK3Q8IV63 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
VRK3Q8IV63 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.11■■□□□ 1.61
VRK3Q8IV63 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.11■■□□□ 1.61
VRK3Q8IV63 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
VRK3Q8IV63 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
VRK3Q8IV63 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.1■■□□□ 1.61
VRK3Q8IV63 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC25.1■■□□□ 1.61
VRK3Q8IV63 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.1■■□□□ 1.61
VRK3Q8IV63 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
VRK3Q8IV63 MEST-211ENST00000437945 1455 ntTSL 5 BASIC25.09■■□□□ 1.61
VRK3Q8IV63 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
VRK3Q8IV63 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.09■■□□□ 1.61
VRK3Q8IV63 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC25.08■■□□□ 1.61
VRK3Q8IV63 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
VRK3Q8IV63 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.06■■□□□ 1.6
VRK3Q8IV63 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
VRK3Q8IV63 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
VRK3Q8IV63 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
VRK3Q8IV63 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VRK3Q8IV63 LINC01971-201ENST00000617888 1048 ntBASIC25.04■■□□□ 1.6
VRK3Q8IV63 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
VRK3Q8IV63 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
VRK3Q8IV63 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
VRK3Q8IV63 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
VRK3Q8IV63 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC25.02■■□□□ 1.6
VRK3Q8IV63 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
VRK3Q8IV63 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
VRK3Q8IV63 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.01■■□□□ 1.59
VRK3Q8IV63 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
VRK3Q8IV63 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
VRK3Q8IV63 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
VRK3Q8IV63 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
VRK3Q8IV63 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
VRK3Q8IV63 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25■■□□□ 1.59
VRK3Q8IV63 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
VRK3Q8IV63 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
VRK3Q8IV63 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
VRK3Q8IV63 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
VRK3Q8IV63 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
VRK3Q8IV63 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.99■■□□□ 1.59
VRK3Q8IV63 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
VRK3Q8IV63 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC24.98■■□□□ 1.59
VRK3Q8IV63 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
VRK3Q8IV63 DUX4L11-201ENST00000611504 1267 ntBASIC24.97■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms