Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PTCHD3Q3KNS1 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
PTCHD3Q3KNS1 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.08■■□□□ 1.61
PTCHD3Q3KNS1 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.07■■□□□ 1.6
PTCHD3Q3KNS1 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PTCHD3Q3KNS1 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
PTCHD3Q3KNS1 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PTCHD3Q3KNS1 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PTCHD3Q3KNS1 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
PTCHD3Q3KNS1 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
PTCHD3Q3KNS1 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PTCHD3Q3KNS1 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.04■■□□□ 1.6
PTCHD3Q3KNS1 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PTCHD3Q3KNS1 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC25.04■■□□□ 1.6
PTCHD3Q3KNS1 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PTCHD3Q3KNS1 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.03■■□□□ 1.6
PTCHD3Q3KNS1 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PTCHD3Q3KNS1 DRD5P2-201ENST00000421395 2012 ntBASIC25.02■■□□□ 1.6
PTCHD3Q3KNS1 HLA-V-202ENST00000446817 847 ntBASIC25.02■■□□□ 1.6
PTCHD3Q3KNS1 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.02■■□□□ 1.6
PTCHD3Q3KNS1 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
PTCHD3Q3KNS1 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.01■■□□□ 1.59
PTCHD3Q3KNS1 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
PTCHD3Q3KNS1 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PTCHD3Q3KNS1 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PTCHD3Q3KNS1 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
PTCHD3Q3KNS1 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC25■■□□□ 1.59
PTCHD3Q3KNS1 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
PTCHD3Q3KNS1 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PTCHD3Q3KNS1 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.99■■□□□ 1.59
PTCHD3Q3KNS1 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
PTCHD3Q3KNS1 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
PTCHD3Q3KNS1 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.99■■□□□ 1.59
PTCHD3Q3KNS1 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTCHD3Q3KNS1 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTCHD3Q3KNS1 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PTCHD3Q3KNS1 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
PTCHD3Q3KNS1 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PTCHD3Q3KNS1 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PTCHD3Q3KNS1 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.97■■□□□ 1.59
PTCHD3Q3KNS1 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PTCHD3Q3KNS1 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PTCHD3Q3KNS1 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.96■■□□□ 1.59
PTCHD3Q3KNS1 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
PTCHD3Q3KNS1 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PTCHD3Q3KNS1 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PTCHD3Q3KNS1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.95■■□□□ 1.58
PTCHD3Q3KNS1 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
PTCHD3Q3KNS1 AC142086.6-201ENST00000621154 1765 ntBASIC24.95■■□□□ 1.58
PTCHD3Q3KNS1 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24.94■■□□□ 1.58
PTCHD3Q3KNS1 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
PTCHD3Q3KNS1 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
PTCHD3Q3KNS1 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC24.94■■□□□ 1.58
PTCHD3Q3KNS1 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.94■■□□□ 1.58
PTCHD3Q3KNS1 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.93■■□□□ 1.58
PTCHD3Q3KNS1 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC24.93■■□□□ 1.58
PTCHD3Q3KNS1 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.93■■□□□ 1.58
PTCHD3Q3KNS1 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.93■■□□□ 1.58
PTCHD3Q3KNS1 AC135983.2-203ENST00000454486 1613 ntBASIC24.93■■□□□ 1.58
PTCHD3Q3KNS1 AC100797.4-201ENST00000631653 1827 ntBASIC24.93■■□□□ 1.58
PTCHD3Q3KNS1 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.93■■□□□ 1.58
PTCHD3Q3KNS1 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.92■■□□□ 1.58
PTCHD3Q3KNS1 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PTCHD3Q3KNS1 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC24.92■■□□□ 1.58
PTCHD3Q3KNS1 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PTCHD3Q3KNS1 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.92■■□□□ 1.58
PTCHD3Q3KNS1 LINC00273-201ENST00000539813 1452 ntBASIC24.91■■□□□ 1.58
PTCHD3Q3KNS1 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
PTCHD3Q3KNS1 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC24.91■■□□□ 1.58
PTCHD3Q3KNS1 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
PTCHD3Q3KNS1 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
PTCHD3Q3KNS1 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PTCHD3Q3KNS1 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PTCHD3Q3KNS1 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.9■■□□□ 1.58
PTCHD3Q3KNS1 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
PTCHD3Q3KNS1 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
PTCHD3Q3KNS1 WHAMMP2-203ENST00000563942 1603 ntBASIC24.89■■□□□ 1.57
PTCHD3Q3KNS1 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.89■■□□□ 1.57
PTCHD3Q3KNS1 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
PTCHD3Q3KNS1 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
PTCHD3Q3KNS1 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
PTCHD3Q3KNS1 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PTCHD3Q3KNS1 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
PTCHD3Q3KNS1 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC24.87■■□□□ 1.57
PTCHD3Q3KNS1 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PTCHD3Q3KNS1 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.87■■□□□ 1.57
PTCHD3Q3KNS1 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PTCHD3Q3KNS1 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC24.86■■□□□ 1.57
PTCHD3Q3KNS1 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.86■■□□□ 1.57
PTCHD3Q3KNS1 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
PTCHD3Q3KNS1 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PTCHD3Q3KNS1 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC24.85■■□□□ 1.57
PTCHD3Q3KNS1 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PTCHD3Q3KNS1 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.85■■□□□ 1.57
PTCHD3Q3KNS1 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC24.85■■□□□ 1.57
PTCHD3Q3KNS1 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
PTCHD3Q3KNS1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC24.85■■□□□ 1.57
PTCHD3Q3KNS1 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.85■■□□□ 1.57
PTCHD3Q3KNS1 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PTCHD3Q3KNS1 LINC01971-201ENST00000617888 1048 ntBASIC24.84■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 10 ms