Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NEK3P51956 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NEK3P51956 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
NEK3P51956 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.38■■□□□ 1.81
NEK3P51956 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NEK3P51956 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.38■■□□□ 1.81
NEK3P51956 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
NEK3P51956 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NEK3P51956 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NEK3P51956 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NEK3P51956 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.36■■□□□ 1.81
NEK3P51956 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NEK3P51956 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.35■■□□□ 1.81
NEK3P51956 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC26.35■■□□□ 1.81
NEK3P51956 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NEK3P51956 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NEK3P51956 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NEK3P51956 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
NEK3P51956 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NEK3P51956 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NEK3P51956 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
NEK3P51956 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NEK3P51956 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.32■■□□□ 1.8
NEK3P51956 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
NEK3P51956 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NEK3P51956 LINC01971-201ENST00000617888 1048 ntBASIC26.3■■□□□ 1.8
NEK3P51956 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NEK3P51956 AL139393.2-201ENST00000608721 2025 ntBASIC26.29■■□□□ 1.8
NEK3P51956 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
NEK3P51956 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
NEK3P51956 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NEK3P51956 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NEK3P51956 HLA-V-202ENST00000446817 847 ntBASIC26.28■■□□□ 1.8
NEK3P51956 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.28■■□□□ 1.8
NEK3P51956 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NEK3P51956 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
NEK3P51956 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
NEK3P51956 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.25■■□□□ 1.79
NEK3P51956 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.24■■□□□ 1.79
NEK3P51956 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.24■■□□□ 1.79
NEK3P51956 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NEK3P51956 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NEK3P51956 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.23■■□□□ 1.79
NEK3P51956 MACF1-219ENST00000484793 834 ntTSL 2 BASIC26.23■■□□□ 1.79
NEK3P51956 DUX4L11-201ENST00000611504 1267 ntBASIC26.23■■□□□ 1.79
NEK3P51956 DUX4L12-201ENST00000614593 1267 ntBASIC26.23■■□□□ 1.79
NEK3P51956 DUX4L14-201ENST00000621227 1267 ntBASIC26.23■■□□□ 1.79
NEK3P51956 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
NEK3P51956 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NEK3P51956 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NEK3P51956 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NEK3P51956 DRD5P2-201ENST00000421395 2012 ntBASIC26.21■■□□□ 1.79
NEK3P51956 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.21■■□□□ 1.79
NEK3P51956 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC26.2■■□□□ 1.79
NEK3P51956 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
NEK3P51956 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NEK3P51956 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NEK3P51956 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NEK3P51956 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
NEK3P51956 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.18■■□□□ 1.78
NEK3P51956 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.18■■□□□ 1.78
NEK3P51956 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.18■■□□□ 1.78
NEK3P51956 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.18■■□□□ 1.78
NEK3P51956 AGPS-202ENST00000409888 815 ntTSL 4 BASIC26.17■■□□□ 1.78
NEK3P51956 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC26.17■■□□□ 1.78
NEK3P51956 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC26.17■■□□□ 1.78
NEK3P51956 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
NEK3P51956 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
NEK3P51956 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
NEK3P51956 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.15■■□□□ 1.78
NEK3P51956 LINC00273-201ENST00000539813 1452 ntBASIC26.14■■□□□ 1.78
NEK3P51956 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
NEK3P51956 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.77
NEK3P51956 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.77
NEK3P51956 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
NEK3P51956 MIR3648-2-201ENST00000581792 180 ntBASIC26.13■■□□□ 1.77
NEK3P51956 MIR3648-1-201ENST00000615959 180 ntBASIC26.13■■□□□ 1.77
NEK3P51956 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.13■■□□□ 1.77
NEK3P51956 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.12■■□□□ 1.77
NEK3P51956 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC26.12■■□□□ 1.77
NEK3P51956 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.12■■□□□ 1.77
NEK3P51956 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
NEK3P51956 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
NEK3P51956 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
NEK3P51956 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.12■■□□□ 1.77
NEK3P51956 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
NEK3P51956 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.11■■□□□ 1.77
NEK3P51956 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
NEK3P51956 AC127502.1-201ENST00000399971 1502 ntBASIC26.11■■□□□ 1.77
NEK3P51956 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC26.11■■□□□ 1.77
NEK3P51956 CR559946.2-201ENST00000623684 991 ntBASIC26.11■■□□□ 1.77
NEK3P51956 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
NEK3P51956 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
NEK3P51956 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
NEK3P51956 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
NEK3P51956 RPS2-202ENST00000526522 924 ntTSL 2 BASIC26.1■■□□□ 1.77
NEK3P51956 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.1■■□□□ 1.77
NEK3P51956 AC016575.1-201ENST00000607026 382 ntBASIC26.1■■□□□ 1.77
NEK3P51956 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.1■■□□□ 1.77
NEK3P51956 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.1■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms