Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NEK3P51956 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NEK3P51956 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
NEK3P51956 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.38■■□□□ 1.81
NEK3P51956 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NEK3P51956 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.38■■□□□ 1.81
NEK3P51956 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
NEK3P51956 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NEK3P51956 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NEK3P51956 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NEK3P51956 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.36■■□□□ 1.81
NEK3P51956 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NEK3P51956 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.35■■□□□ 1.81
NEK3P51956 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC26.35■■□□□ 1.81
NEK3P51956 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NEK3P51956 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NEK3P51956 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NEK3P51956 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
NEK3P51956 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NEK3P51956 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NEK3P51956 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
NEK3P51956 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NEK3P51956 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.32■■□□□ 1.8
NEK3P51956 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
NEK3P51956 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NEK3P51956 LINC01971-201ENST00000617888 1048 ntBASIC26.3■■□□□ 1.8
NEK3P51956 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NEK3P51956 AL139393.2-201ENST00000608721 2025 ntBASIC26.29■■□□□ 1.8
NEK3P51956 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
NEK3P51956 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
NEK3P51956 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NEK3P51956 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NEK3P51956 HLA-V-202ENST00000446817 847 ntBASIC26.28■■□□□ 1.8
NEK3P51956 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.28■■□□□ 1.8
NEK3P51956 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NEK3P51956 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
NEK3P51956 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
NEK3P51956 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.25■■□□□ 1.79
NEK3P51956 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.24■■□□□ 1.79
NEK3P51956 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.24■■□□□ 1.79
NEK3P51956 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NEK3P51956 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NEK3P51956 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.23■■□□□ 1.79
NEK3P51956 MACF1-219ENST00000484793 834 ntTSL 2 BASIC26.23■■□□□ 1.79
NEK3P51956 DUX4L11-201ENST00000611504 1267 ntBASIC26.23■■□□□ 1.79
NEK3P51956 DUX4L12-201ENST00000614593 1267 ntBASIC26.23■■□□□ 1.79
NEK3P51956 DUX4L14-201ENST00000621227 1267 ntBASIC26.23■■□□□ 1.79
NEK3P51956 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
NEK3P51956 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NEK3P51956 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NEK3P51956 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NEK3P51956 DRD5P2-201ENST00000421395 2012 ntBASIC26.21■■□□□ 1.79
NEK3P51956 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.21■■□□□ 1.79
NEK3P51956 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC26.2■■□□□ 1.79
NEK3P51956 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
NEK3P51956 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NEK3P51956 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NEK3P51956 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NEK3P51956 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
NEK3P51956 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.18■■□□□ 1.78
NEK3P51956 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.18■■□□□ 1.78
NEK3P51956 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.18■■□□□ 1.78
NEK3P51956 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.18■■□□□ 1.78
NEK3P51956 AGPS-202ENST00000409888 815 ntTSL 4 BASIC26.17■■□□□ 1.78
NEK3P51956 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC26.17■■□□□ 1.78
NEK3P51956 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC26.17■■□□□ 1.78
NEK3P51956 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
NEK3P51956 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
NEK3P51956 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
NEK3P51956 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.15■■□□□ 1.78
NEK3P51956 LINC00273-201ENST00000539813 1452 ntBASIC26.14■■□□□ 1.78
NEK3P51956 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
NEK3P51956 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.77
NEK3P51956 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.77
NEK3P51956 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
NEK3P51956 MIR3648-2-201ENST00000581792 180 ntBASIC26.13■■□□□ 1.77
NEK3P51956 MIR3648-1-201ENST00000615959 180 ntBASIC26.13■■□□□ 1.77
NEK3P51956 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.13■■□□□ 1.77
NEK3P51956 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.12■■□□□ 1.77
NEK3P51956 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC26.12■■□□□ 1.77
NEK3P51956 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.12■■□□□ 1.77
NEK3P51956 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
NEK3P51956 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
NEK3P51956 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
NEK3P51956 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.12■■□□□ 1.77
NEK3P51956 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
NEK3P51956 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.11■■□□□ 1.77
NEK3P51956 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
NEK3P51956 AC127502.1-201ENST00000399971 1502 ntBASIC26.11■■□□□ 1.77
NEK3P51956 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC26.11■■□□□ 1.77
NEK3P51956 CR559946.2-201ENST00000623684 991 ntBASIC26.11■■□□□ 1.77
NEK3P51956 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
NEK3P51956 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
NEK3P51956 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
NEK3P51956 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
NEK3P51956 RPS2-202ENST00000526522 924 ntTSL 2 BASIC26.1■■□□□ 1.77
NEK3P51956 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.1■■□□□ 1.77
NEK3P51956 AC016575.1-201ENST00000607026 382 ntBASIC26.1■■□□□ 1.77
NEK3P51956 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.1■■□□□ 1.77
NEK3P51956 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.1■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms