Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC26.13■■□□□ 1.77
CXCL12P48061 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.13■■□□□ 1.77
CXCL12P48061 CHST11-203ENST00000547956 936 ntTSL 2 BASIC26.12■■□□□ 1.77
CXCL12P48061 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
CXCL12P48061 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CXCL12P48061 AC018358.1-201ENST00000631079 1402 ntBASIC26.11■■□□□ 1.77
CXCL12P48061 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
CXCL12P48061 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC26.11■■□□□ 1.77
CXCL12P48061 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CXCL12P48061 U85056.1-201ENST00000616429 682 ntBASIC26.1■■□□□ 1.77
CXCL12P48061 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CXCL12P48061 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
CXCL12P48061 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CXCL12P48061 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.09■■□□□ 1.77
CXCL12P48061 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CXCL12P48061 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CXCL12P48061 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.07■■□□□ 1.76
CXCL12P48061 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
CXCL12P48061 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
CXCL12P48061 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CXCL12P48061 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CXCL12P48061 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
CXCL12P48061 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC26.05■■□□□ 1.76
CXCL12P48061 AC060814.1-201ENST00000554326 538 ntBASIC26.05■■□□□ 1.76
CXCL12P48061 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.04■■□□□ 1.76
CXCL12P48061 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CXCL12P48061 AC135983.2-203ENST00000454486 1613 ntBASIC26.03■■□□□ 1.76
CXCL12P48061 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CXCL12P48061 WHAMMP2-203ENST00000563942 1603 ntBASIC26.02■■□□□ 1.76
CXCL12P48061 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CXCL12P48061 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC26.01■■□□□ 1.75
CXCL12P48061 AC148477.6-201ENST00000623746 465 ntBASIC26.01■■□□□ 1.75
CXCL12P48061 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CXCL12P48061 AC127502.1-201ENST00000399971 1502 ntBASIC26■■□□□ 1.75
CXCL12P48061 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC26■■□□□ 1.75
CXCL12P48061 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
CXCL12P48061 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26■■□□□ 1.75
CXCL12P48061 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC25.99■■□□□ 1.75
CXCL12P48061 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
CXCL12P48061 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
CXCL12P48061 AC110285.7-201ENST00000624417 1536 ntBASIC25.98■■□□□ 1.75
CXCL12P48061 TSPY13P-201ENST00000338964 914 ntBASIC25.98■■□□□ 1.75
CXCL12P48061 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
CXCL12P48061 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC25.98■■□□□ 1.75
CXCL12P48061 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC25.98■■□□□ 1.75
CXCL12P48061 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
CXCL12P48061 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CXCL12P48061 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC25.96■■□□□ 1.75
CXCL12P48061 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC25.96■■□□□ 1.75
CXCL12P48061 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CXCL12P48061 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
CXCL12P48061 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC25.96■■□□□ 1.75
CXCL12P48061 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC25.96■■□□□ 1.75
CXCL12P48061 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC25.95■■□□□ 1.74
CXCL12P48061 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
CXCL12P48061 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
CXCL12P48061 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC25.95■■□□□ 1.74
CXCL12P48061 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CXCL12P48061 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
CXCL12P48061 AC004987.1-201ENST00000428627 508 ntBASIC25.94■■□□□ 1.74
CXCL12P48061 GFER-205ENST00000569451 517 ntTSL 5 BASIC25.94■■□□□ 1.74
CXCL12P48061 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
CXCL12P48061 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC25.94■■□□□ 1.74
CXCL12P48061 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CXCL12P48061 KRT18P60-201ENST00000312876 1297 ntBASIC25.93■■□□□ 1.74
CXCL12P48061 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
CXCL12P48061 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CXCL12P48061 ATP5G2P3-201ENST00000429083 425 ntBASIC25.92■■□□□ 1.74
CXCL12P48061 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC25.92■■□□□ 1.74
CXCL12P48061 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC25.91■■□□□ 1.74
CXCL12P48061 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CXCL12P48061 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CXCL12P48061 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
CXCL12P48061 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CXCL12P48061 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC25.9■■□□□ 1.74
CXCL12P48061 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CXCL12P48061 AC092296.2-201ENST00000589470 999 ntBASIC25.9■■□□□ 1.74
CXCL12P48061 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CXCL12P48061 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.89■■□□□ 1.74
CXCL12P48061 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC25.89■■□□□ 1.74
CXCL12P48061 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC25.89■■□□□ 1.74
CXCL12P48061 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
CXCL12P48061 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
CXCL12P48061 MIR219A2-201ENST00000608502 1504 ntBASIC25.88■■□□□ 1.73
CXCL12P48061 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CXCL12P48061 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
CXCL12P48061 GUK1-208ENST00000366728 842 ntTSL 2 BASIC25.87■■□□□ 1.73
CXCL12P48061 ECEL1P2-201ENST00000461596 1295 ntBASIC25.87■■□□□ 1.73
CXCL12P48061 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC25.87■■□□□ 1.73
CXCL12P48061 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.87■■□□□ 1.73
CXCL12P48061 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
CXCL12P48061 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CXCL12P48061 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC25.86■■□□□ 1.73
CXCL12P48061 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
CXCL12P48061 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CXCL12P48061 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CXCL12P48061 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC25.85■■□□□ 1.73
CXCL12P48061 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CXCL12P48061 RARRES2P1-201ENST00000474487 481 ntBASIC25.85■■□□□ 1.73
CXCL12P48061 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC25.84■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms