Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.15■■□□□ 1.78
HLA-DQB2P05538 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
HLA-DQB2P05538 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.14■■□□□ 1.78
HLA-DQB2P05538 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
HLA-DQB2P05538 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
HLA-DQB2P05538 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.14■■□□□ 1.78
HLA-DQB2P05538 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
HLA-DQB2P05538 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
HLA-DQB2P05538 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.13■■□□□ 1.77
HLA-DQB2P05538 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.13■■□□□ 1.77
HLA-DQB2P05538 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.13■■□□□ 1.77
HLA-DQB2P05538 DRD5P2-201ENST00000421395 2012 ntBASIC26.13■■□□□ 1.77
HLA-DQB2P05538 AC100797.4-201ENST00000631653 1827 ntBASIC26.12■■□□□ 1.77
HLA-DQB2P05538 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.12■■□□□ 1.77
HLA-DQB2P05538 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HLA-DQB2P05538 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.12■■□□□ 1.77
HLA-DQB2P05538 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.11■■□□□ 1.77
HLA-DQB2P05538 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
HLA-DQB2P05538 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
HLA-DQB2P05538 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
HLA-DQB2P05538 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
HLA-DQB2P05538 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.11■■□□□ 1.77
HLA-DQB2P05538 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.11■■□□□ 1.77
HLA-DQB2P05538 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.11■■□□□ 1.77
HLA-DQB2P05538 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HLA-DQB2P05538 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.1■■□□□ 1.77
HLA-DQB2P05538 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC26.1■■□□□ 1.77
HLA-DQB2P05538 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
HLA-DQB2P05538 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HLA-DQB2P05538 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.1■■□□□ 1.77
HLA-DQB2P05538 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
HLA-DQB2P05538 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
HLA-DQB2P05538 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.09■■□□□ 1.77
HLA-DQB2P05538 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.09■■□□□ 1.77
HLA-DQB2P05538 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
HLA-DQB2P05538 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
HLA-DQB2P05538 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC26.08■■□□□ 1.77
HLA-DQB2P05538 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
HLA-DQB2P05538 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.08■■□□□ 1.77
HLA-DQB2P05538 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
HLA-DQB2P05538 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
HLA-DQB2P05538 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.08■■□□□ 1.76
HLA-DQB2P05538 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.07■■□□□ 1.76
HLA-DQB2P05538 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
HLA-DQB2P05538 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.07■■□□□ 1.76
HLA-DQB2P05538 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
HLA-DQB2P05538 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.07■■□□□ 1.76
HLA-DQB2P05538 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
HLA-DQB2P05538 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC26.06■■□□□ 1.76
HLA-DQB2P05538 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
HLA-DQB2P05538 MEST-211ENST00000437945 1455 ntTSL 5 BASIC26.05■■□□□ 1.76
HLA-DQB2P05538 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
HLA-DQB2P05538 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.05■■□□□ 1.76
HLA-DQB2P05538 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.05■■□□□ 1.76
HLA-DQB2P05538 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.05■■□□□ 1.76
HLA-DQB2P05538 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
HLA-DQB2P05538 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.04■■□□□ 1.76
HLA-DQB2P05538 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
HLA-DQB2P05538 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.04■■□□□ 1.76
HLA-DQB2P05538 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
HLA-DQB2P05538 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
HLA-DQB2P05538 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.03■■□□□ 1.76
HLA-DQB2P05538 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.03■■□□□ 1.76
HLA-DQB2P05538 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
HLA-DQB2P05538 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
HLA-DQB2P05538 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
HLA-DQB2P05538 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.01■■□□□ 1.75
HLA-DQB2P05538 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
HLA-DQB2P05538 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
HLA-DQB2P05538 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC26■■□□□ 1.75
HLA-DQB2P05538 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26■■□□□ 1.75
HLA-DQB2P05538 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
HLA-DQB2P05538 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
HLA-DQB2P05538 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.99■■□□□ 1.75
HLA-DQB2P05538 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
HLA-DQB2P05538 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
HLA-DQB2P05538 AC142086.6-201ENST00000621154 1765 ntBASIC25.98■■□□□ 1.75
HLA-DQB2P05538 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
HLA-DQB2P05538 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.97■■□□□ 1.75
HLA-DQB2P05538 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC25.97■■□□□ 1.75
HLA-DQB2P05538 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
HLA-DQB2P05538 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.96■■□□□ 1.75
HLA-DQB2P05538 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
HLA-DQB2P05538 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
HLA-DQB2P05538 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC25.95■■□□□ 1.74
HLA-DQB2P05538 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
HLA-DQB2P05538 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.94■■□□□ 1.74
HLA-DQB2P05538 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
HLA-DQB2P05538 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC25.93■■□□□ 1.74
HLA-DQB2P05538 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
HLA-DQB2P05538 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
HLA-DQB2P05538 PROC-203ENST00000409048 1586 ntTSL 5 BASIC25.92■■□□□ 1.74
HLA-DQB2P05538 ZNRF2P2-203ENST00000454624 420 ntBASIC25.92■■□□□ 1.74
HLA-DQB2P05538 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
HLA-DQB2P05538 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.91■■□□□ 1.74
HLA-DQB2P05538 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
HLA-DQB2P05538 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
HLA-DQB2P05538 ABHD17AP4-201ENST00000411545 909 ntBASIC25.9■■□□□ 1.74
HLA-DQB2P05538 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.9■■□□□ 1.74
HLA-DQB2P05538 LINC01971-201ENST00000617888 1048 ntBASIC25.9■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms