Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CHRNA1P02708 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.14
CHRNA1P02708 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC28.39■■■□□ 2.14
CHRNA1P02708 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC28.39■■■□□ 2.14
CHRNA1P02708 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CHRNA1P02708 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC28.37■■■□□ 2.13
CHRNA1P02708 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC28.36■■■□□ 2.13
CHRNA1P02708 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CHRNA1P02708 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC28.36■■■□□ 2.13
CHRNA1P02708 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHRNA1P02708 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC28.35■■■□□ 2.13
CHRNA1P02708 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CHRNA1P02708 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.34■■■□□ 2.13
CHRNA1P02708 CEP120-209ENST00000515110 606 ntTSL 3 BASIC28.34■■■□□ 2.13
CHRNA1P02708 AC008813.1-201ENST00000536597 885 ntBASIC28.34■■■□□ 2.13
CHRNA1P02708 RNF126P1-201ENST00000567452 1320 ntBASIC28.34■■■□□ 2.13
CHRNA1P02708 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CHRNA1P02708 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC28.33■■■□□ 2.13
CHRNA1P02708 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CHRNA1P02708 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CHRNA1P02708 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC28.32■■■□□ 2.12
CHRNA1P02708 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
CHRNA1P02708 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
CHRNA1P02708 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
CHRNA1P02708 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC28.28■■■□□ 2.12
CHRNA1P02708 AC110285.7-201ENST00000624417 1536 ntBASIC28.28■■■□□ 2.12
CHRNA1P02708 ABHD17AP5-201ENST00000580133 923 ntBASIC28.28■■■□□ 2.12
CHRNA1P02708 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC28.28■■■□□ 2.12
CHRNA1P02708 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CHRNA1P02708 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
CHRNA1P02708 AC022413.1-201ENST00000624602 984 ntBASIC28.27■■■□□ 2.12
CHRNA1P02708 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CHRNA1P02708 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CHRNA1P02708 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC28.26■■■□□ 2.12
CHRNA1P02708 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CHRNA1P02708 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
CHRNA1P02708 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.26■■■□□ 2.11
CHRNA1P02708 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC28.26■■■□□ 2.11
CHRNA1P02708 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CHRNA1P02708 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC28.25■■■□□ 2.11
CHRNA1P02708 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CHRNA1P02708 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
CHRNA1P02708 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CHRNA1P02708 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
CHRNA1P02708 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CHRNA1P02708 CHST11-203ENST00000547956 936 ntTSL 2 BASIC28.24■■■□□ 2.11
CHRNA1P02708 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CHRNA1P02708 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CHRNA1P02708 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CHRNA1P02708 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
CHRNA1P02708 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC28.23■■■□□ 2.11
CHRNA1P02708 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC28.23■■■□□ 2.11
CHRNA1P02708 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CHRNA1P02708 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CHRNA1P02708 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CHRNA1P02708 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC28.21■■■□□ 2.11
CHRNA1P02708 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC28.2■■■□□ 2.1
CHRNA1P02708 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CHRNA1P02708 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
CHRNA1P02708 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
CHRNA1P02708 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CHRNA1P02708 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CHRNA1P02708 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC28.18■■■□□ 2.1
CHRNA1P02708 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC28.17■■■□□ 2.1
CHRNA1P02708 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC28.17■■■□□ 2.1
CHRNA1P02708 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC28.17■■■□□ 2.1
CHRNA1P02708 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
CHRNA1P02708 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
CHRNA1P02708 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
CHRNA1P02708 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC28.16■■■□□ 2.1
CHRNA1P02708 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
CHRNA1P02708 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CHRNA1P02708 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC28.15■■■□□ 2.1
CHRNA1P02708 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
CHRNA1P02708 AC148477.6-201ENST00000623746 465 ntBASIC28.15■■■□□ 2.1
CHRNA1P02708 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC28.15■■■□□ 2.1
CHRNA1P02708 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
CHRNA1P02708 RPS2-210ENST00000530225 765 ntTSL 2 BASIC28.14■■■□□ 2.1
CHRNA1P02708 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.14■■■□□ 2.1
CHRNA1P02708 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
CHRNA1P02708 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
CHRNA1P02708 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
CHRNA1P02708 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
CHRNA1P02708 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
CHRNA1P02708 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
CHRNA1P02708 HES4-202ENST00000428771 1040 ntTSL 2 BASIC28.11■■■□□ 2.09
CHRNA1P02708 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC28.11■■■□□ 2.09
CHRNA1P02708 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC28.11■■■□□ 2.09
CHRNA1P02708 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
CHRNA1P02708 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
CHRNA1P02708 MEST-211ENST00000437945 1455 ntTSL 5 BASIC28.1■■■□□ 2.09
CHRNA1P02708 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
CHRNA1P02708 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
CHRNA1P02708 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CHRNA1P02708 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC28.09■■■□□ 2.09
CHRNA1P02708 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC28.09■■■□□ 2.09
CHRNA1P02708 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CHRNA1P02708 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CHRNA1P02708 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC28.08■■■□□ 2.09
CHRNA1P02708 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC28.08■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms