Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 AC008813.1-201ENST00000536597 885 ntBASIC29.08■■■□□ 2.25
PGK1P00558 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
PGK1P00558 AC127502.1-201ENST00000399971 1502 ntBASIC29.07■■■□□ 2.24
PGK1P00558 AC012354.3-201ENST00000623734 483 ntBASIC29.06■■■□□ 2.24
PGK1P00558 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
PGK1P00558 WHAMMP2-203ENST00000563942 1603 ntBASIC29.05■■■□□ 2.24
PGK1P00558 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
PGK1P00558 HES4-202ENST00000428771 1040 ntTSL 2 BASIC29.04■■■□□ 2.24
PGK1P00558 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
PGK1P00558 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
PGK1P00558 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC29.02■■■□□ 2.24
PGK1P00558 AC135983.2-203ENST00000454486 1613 ntBASIC29.02■■■□□ 2.24
PGK1P00558 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
PGK1P00558 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC29.02■■■□□ 2.24
PGK1P00558 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
PGK1P00558 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
PGK1P00558 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
PGK1P00558 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC29.01■■■□□ 2.23
PGK1P00558 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
PGK1P00558 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC29■■■□□ 2.23
PGK1P00558 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC29■■■□□ 2.23
PGK1P00558 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC29■■■□□ 2.23
PGK1P00558 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC29■■■□□ 2.23
PGK1P00558 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC28.99■■■□□ 2.23
PGK1P00558 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC28.99■■■□□ 2.23
PGK1P00558 CHST11-203ENST00000547956 936 ntTSL 2 BASIC28.99■■■□□ 2.23
PGK1P00558 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
PGK1P00558 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC28.98■■■□□ 2.23
PGK1P00558 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC28.97■■■□□ 2.23
PGK1P00558 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
PGK1P00558 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
PGK1P00558 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
PGK1P00558 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC28.95■■■□□ 2.22
PGK1P00558 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
PGK1P00558 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
PGK1P00558 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
PGK1P00558 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC28.93■■■□□ 2.22
PGK1P00558 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
PGK1P00558 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
PGK1P00558 AC110285.7-201ENST00000624417 1536 ntBASIC28.93■■■□□ 2.22
PGK1P00558 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC28.93■■■□□ 2.22
PGK1P00558 AL033527.3-201ENST00000566366 1196 ntBASIC28.92■■■□□ 2.22
PGK1P00558 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
PGK1P00558 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC28.9■■■□□ 2.22
PGK1P00558 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC28.9■■■□□ 2.22
PGK1P00558 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC28.9■■■□□ 2.22
PGK1P00558 U85056.1-201ENST00000616429 682 ntBASIC28.9■■■□□ 2.22
PGK1P00558 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC28.9■■■□□ 2.22
PGK1P00558 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
PGK1P00558 AC060814.1-201ENST00000554326 538 ntBASIC28.89■■■□□ 2.22
PGK1P00558 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC28.89■■■□□ 2.22
PGK1P00558 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
PGK1P00558 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
PGK1P00558 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
PGK1P00558 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
PGK1P00558 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC28.88■■■□□ 2.21
PGK1P00558 HYI-213ENST00000583037 1322 ntTSL 5 BASIC28.87■■■□□ 2.21
PGK1P00558 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
PGK1P00558 AC018358.1-201ENST00000631079 1402 ntBASIC28.86■■■□□ 2.21
PGK1P00558 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC28.86■■■□□ 2.21
PGK1P00558 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC28.86■■■□□ 2.21
PGK1P00558 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC28.86■■■□□ 2.21
PGK1P00558 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
PGK1P00558 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
PGK1P00558 AC148477.6-201ENST00000623746 465 ntBASIC28.85■■■□□ 2.21
PGK1P00558 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
PGK1P00558 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC28.83■■■□□ 2.21
PGK1P00558 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
PGK1P00558 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC28.82■■■□□ 2.2
PGK1P00558 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
PGK1P00558 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC28.82■■■□□ 2.2
PGK1P00558 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC28.82■■■□□ 2.2
PGK1P00558 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
PGK1P00558 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC28.8■■■□□ 2.2
PGK1P00558 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC28.8■■■□□ 2.2
PGK1P00558 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC28.8■■■□□ 2.2
PGK1P00558 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.79■■■□□ 2.2
PGK1P00558 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
PGK1P00558 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
PGK1P00558 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC28.79■■■□□ 2.2
PGK1P00558 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC28.79■■■□□ 2.2
PGK1P00558 MIR219A2-201ENST00000608502 1504 ntBASIC28.79■■■□□ 2.2
PGK1P00558 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC28.78■■■□□ 2.2
PGK1P00558 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
PGK1P00558 AL135925.1-201ENST00000605920 1701 ntBASIC28.77■■■□□ 2.2
PGK1P00558 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC28.76■■■□□ 2.19
PGK1P00558 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PGK1P00558 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PGK1P00558 RPS2-210ENST00000530225 765 ntTSL 2 BASIC28.75■■■□□ 2.19
PGK1P00558 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
PGK1P00558 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC28.74■■■□□ 2.19
PGK1P00558 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.73■■■□□ 2.19
PGK1P00558 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC28.73■■■□□ 2.19
PGK1P00558 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
PGK1P00558 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
PGK1P00558 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC28.72■■■□□ 2.19
PGK1P00558 KRT18P60-201ENST00000312876 1297 ntBASIC28.72■■■□□ 2.19
PGK1P00558 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
PGK1P00558 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
PGK1P00558 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC28.72■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms