Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CDX4O14627 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
CDX4O14627 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC25.37■■□□□ 1.65
CDX4O14627 AC060814.1-201ENST00000554326 538 ntBASIC25.37■■□□□ 1.65
CDX4O14627 TSPY13P-201ENST00000338964 914 ntBASIC25.36■■□□□ 1.65
CDX4O14627 AL161658.1-201ENST00000623641 1967 ntBASIC25.36■■□□□ 1.65
CDX4O14627 AC010864.1-201ENST00000609407 1511 ntBASIC25.36■■□□□ 1.65
CDX4O14627 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
CDX4O14627 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CDX4O14627 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
CDX4O14627 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CDX4O14627 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CDX4O14627 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CDX4O14627 AC004987.1-201ENST00000428627 508 ntBASIC25.34■■□□□ 1.65
CDX4O14627 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC25.34■■□□□ 1.65
CDX4O14627 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CDX4O14627 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CDX4O14627 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC25.34■■□□□ 1.65
CDX4O14627 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CDX4O14627 KRT18P60-201ENST00000312876 1297 ntBASIC25.33■■□□□ 1.65
CDX4O14627 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC25.33■■□□□ 1.65
CDX4O14627 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
CDX4O14627 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CDX4O14627 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
CDX4O14627 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC25.32■■□□□ 1.64
CDX4O14627 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC25.32■■□□□ 1.64
CDX4O14627 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CDX4O14627 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
CDX4O14627 ATP5G2P3-201ENST00000429083 425 ntBASIC25.31■■□□□ 1.64
CDX4O14627 RARRES2P1-201ENST00000474487 481 ntBASIC25.31■■□□□ 1.64
CDX4O14627 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC25.31■■□□□ 1.64
CDX4O14627 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CDX4O14627 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
CDX4O14627 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC25.3■■□□□ 1.64
CDX4O14627 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC25.3■■□□□ 1.64
CDX4O14627 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CDX4O14627 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC25.3■■□□□ 1.64
CDX4O14627 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CDX4O14627 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
CDX4O14627 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CDX4O14627 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CDX4O14627 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CDX4O14627 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CDX4O14627 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC25.27■■□□□ 1.64
CDX4O14627 GUK1-208ENST00000366728 842 ntTSL 2 BASIC25.27■■□□□ 1.64
CDX4O14627 AC148477.6-201ENST00000623746 465 ntBASIC25.27■■□□□ 1.64
CDX4O14627 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CDX4O14627 AC135983.2-203ENST00000454486 1613 ntBASIC25.26■■□□□ 1.63
CDX4O14627 WHAMMP2-203ENST00000563942 1603 ntBASIC25.26■■□□□ 1.63
CDX4O14627 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC25.25■■□□□ 1.63
CDX4O14627 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CDX4O14627 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC25.24■■□□□ 1.63
CDX4O14627 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC25.24■■□□□ 1.63
CDX4O14627 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
CDX4O14627 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CDX4O14627 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
CDX4O14627 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC25.23■■□□□ 1.63
CDX4O14627 AC092296.2-201ENST00000589470 999 ntBASIC25.23■■□□□ 1.63
CDX4O14627 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
CDX4O14627 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC25.22■■□□□ 1.63
CDX4O14627 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
CDX4O14627 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC25.22■■□□□ 1.63
CDX4O14627 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.22■■□□□ 1.63
CDX4O14627 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CDX4O14627 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC25.21■■□□□ 1.63
CDX4O14627 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CDX4O14627 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC25.2■■□□□ 1.62
CDX4O14627 AC110285.7-201ENST00000624417 1536 ntBASIC25.2■■□□□ 1.62
CDX4O14627 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CDX4O14627 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC25.19■■□□□ 1.62
CDX4O14627 AC127502.1-201ENST00000399971 1502 ntBASIC25.18■■□□□ 1.62
CDX4O14627 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
CDX4O14627 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
CDX4O14627 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CDX4O14627 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CDX4O14627 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CDX4O14627 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CDX4O14627 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC25.17■■□□□ 1.62
CDX4O14627 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CDX4O14627 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC25.16■■□□□ 1.62
CDX4O14627 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
CDX4O14627 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CDX4O14627 ECEL1P2-201ENST00000461596 1295 ntBASIC25.15■■□□□ 1.62
CDX4O14627 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC25.15■■□□□ 1.62
CDX4O14627 MIR219A2-201ENST00000608502 1504 ntBASIC25.15■■□□□ 1.62
CDX4O14627 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CDX4O14627 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CDX4O14627 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CDX4O14627 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.14■■□□□ 1.61
CDX4O14627 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
CDX4O14627 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDX4O14627 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC25.13■■□□□ 1.61
CDX4O14627 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDX4O14627 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDX4O14627 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDX4O14627 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CDX4O14627 HES4-204ENST00000484667 667 ntTSL 3 BASIC25.12■■□□□ 1.61
CDX4O14627 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.12■■□□□ 1.61
CDX4O14627 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
CDX4O14627 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC25.11■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms