Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ADCY10P1-203ENST00000567255 4569 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 AC130304.1-201ENST00000622942 2385 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 KCNMA1-248ENST00000638991 11990 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.16
COL9A1P20849 ATXN7L1-202ENST00000419735 5417 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 CHD7-201ENST00000423902 11568 ntAPPRIS P1 TSL 5 BASIC7.8□□□□□ -1.16
COL9A1P20849 PARP14-202ENST00000474629 7915 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 RASSF5-209ENST00000636182 3427 ntTSL 5 BASIC7.8□□□□□ -1.16
COL9A1P20849 CTNNA2-201ENST00000343114 2927 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 PTPRM-202ENST00000400053 5292 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
COL9A1P20849 ZNF100-202ENST00000358296 5745 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC7.8□□□□□ -1.16
COL9A1P20849 AC004941.1-201ENST00000417506 3120 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 MED1-202ENST00000394287 2870 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 CERS6-AS1-201ENST00000425636 2890 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 TMEM52B-203ENST00000381923 2601 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
COL9A1P20849 HEATR4-201ENST00000334988 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 ST7-203ENST00000393443 2360 ntTSL 2 BASIC7.8□□□□□ -1.16
COL9A1P20849 ERG-206ENST00000398911 4914 ntTSL 5 BASIC7.8□□□□□ -1.16
COL9A1P20849 RNA5SP433-201ENST00000364491 114 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 RNU4-2-201ENST00000365668 141 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 SNORA70.8-201ENST00000384231 136 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 Y_RNA.555-201ENST00000384673 110 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 RPS3AP5-201ENST00000389400 821 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 SMARCE1P6-201ENST00000398372 1216 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 MORN2-203ENST00000409131 544 ntTSL 5 BASIC7.8□□□□□ -1.16
COL9A1P20849 OR6E1P-201ENST00000414424 923 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AL590609.2-201ENST00000421430 368 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 RPL12P12-201ENST00000424633 501 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC7.8□□□□□ -1.16
COL9A1P20849 AL589990.1-201ENST00000432210 592 ntTSL 3 BASIC7.8□□□□□ -1.16
COL9A1P20849 AC114755.4-201ENST00000439114 443 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 RPS7P5-201ENST00000441482 581 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AL121871.1-201ENST00000443413 436 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AL450996.1-201ENST00000445574 1202 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 FREM2-AS1-201ENST00000448887 465 ntTSL 2 BASIC7.8□□□□□ -1.16
COL9A1P20849 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC7.8□□□□□ -1.16
COL9A1P20849 AC002553.2-201ENST00000453217 340 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC7.8□□□□□ -1.16
COL9A1P20849 RN7SL101P-201ENST00000496350 279 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 H3F3AP3-201ENST00000497682 407 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 RN7SL388P-201ENST00000498736 339 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC7.8□□□□□ -1.16
COL9A1P20849 AC008638.1-201ENST00000506035 866 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 SCARNA24.1-201ENST00000516465 137 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC7.8□□□□□ -1.16
COL9A1P20849 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC7.8□□□□□ -1.16
COL9A1P20849 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC7.8□□□□□ -1.16
COL9A1P20849 OR8R1P-201ENST00000543943 764 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AC079362.1-202ENST00000547089 278 ntTSL 3 BASIC7.8□□□□□ -1.16
COL9A1P20849 AC090502.2-201ENST00000549267 280 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 UBE2CP1-201ENST00000557130 554 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AC023813.3-201ENST00000561876 539 ntTSL 3 BASIC7.8□□□□□ -1.16
COL9A1P20849 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC7.8□□□□□ -1.16
COL9A1P20849 MIR3910-1-201ENST00000580936 111 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AC011445.2-201ENST00000599274 173 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AC004852.1-201ENST00000605206 154 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC7.8□□□□□ -1.16
COL9A1P20849 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC7.8□□□□□ -1.16
COL9A1P20849 AC012629.3-201ENST00000623397 328 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AC005858.3-201ENST00000624756 589 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AC138409.1-201ENST00000505001 3598 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 MIR137HG-205ENST00000634594 3586 ntTSL 5 BASIC7.8□□□□□ -1.16
COL9A1P20849 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC7.8□□□□□ -1.16
COL9A1P20849 MAP4-210ENST00000439356 2743 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 NOLC1-209ENST00000605788 3932 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 CCDC66-203ENST00000394672 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 HDAC1P2-201ENST00000453661 1398 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 AL354854.1-201ENST00000455940 1363 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 LINC02059-202ENST00000506471 2094 ntTSL 2 BASIC7.8□□□□□ -1.16
COL9A1P20849 LRRC37A12P-201ENST00000454917 1801 ntBASIC7.8□□□□□ -1.16
COL9A1P20849 HNRNPU-219ENST00000639628 4546 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 FNDC3A-204ENST00000492622 6286 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 FAM120B-203ENST00000537664 3212 ntAPPRIS ALT2 TSL 2 BASIC7.8□□□□□ -1.16
COL9A1P20849 PDLIM5-221ENST00000542407 2979 ntAPPRIS ALT1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL9A1P20849 COL21A1-212ENST00000535941 3369 ntAPPRIS ALT1 TSL 5 BASIC7.79□□□□□ -1.16
COL9A1P20849 CHODL-203ENST00000400127 2239 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL9A1P20849 TMEM87A-202ENST00000389834 3109 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
COL9A1P20849 TMTC1-201ENST00000256062 8805 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL9A1P20849 ZNF2-204ENST00000617923 3885 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL9A1P20849 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL9A1P20849 MAPK10-319ENST00000641459 2542 ntBASIC7.79□□□□□ -1.16
COL9A1P20849 CACNB2-201ENST00000282343 3524 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL9A1P20849 ANKRD20A11P-206ENST00000451663 3717 ntBASIC7.79□□□□□ -1.16
COL9A1P20849 AC025822.2-201ENST00000455199 2287 ntTSL 2 BASIC7.79□□□□□ -1.16
COL9A1P20849 OR6N2-201ENST00000339258 954 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
COL9A1P20849 RNU4-81P-201ENST00000363561 144 ntBASIC7.79□□□□□ -1.16
COL9A1P20849 Y_RNA.212-201ENST00000364177 102 ntBASIC7.79□□□□□ -1.16
COL9A1P20849 Y_RNA.350-201ENST00000365409 98 ntBASIC7.79□□□□□ -1.16
COL9A1P20849 SNORA70I-201ENST00000384544 135 ntBASIC7.79□□□□□ -1.16
COL9A1P20849 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
COL9A1P20849 RPS4XP9-201ENST00000405151 780 ntBASIC7.79□□□□□ -1.16
COL9A1P20849 AL606923.1-201ENST00000406616 190 ntBASIC7.79□□□□□ -1.16
COL9A1P20849 Y_RNA.646-201ENST00000410980 101 ntBASIC7.79□□□□□ -1.16
COL9A1P20849 VDAC1P9-201ENST00000412766 841 ntBASIC7.79□□□□□ -1.16
COL9A1P20849 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC7.79□□□□□ -1.16
COL9A1P20849 AC093155.2-201ENST00000420734 937 ntBASIC7.79□□□□□ -1.16
COL9A1P20849 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC7.79□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms