Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDH9Q9HC56 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 RNA5SP413-201ENST00000516373 109 ntBASIC20.16■□□□□ 0.82
PCDH9Q9HC56 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 AC018553.1-201ENST00000616682 1458 ntBASIC20.16■□□□□ 0.82
PCDH9Q9HC56 AC116351.2-201ENST00000606540 1585 ntBASIC20.16■□□□□ 0.82
PCDH9Q9HC56 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
PCDH9Q9HC56 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.15■□□□□ 0.82
PCDH9Q9HC56 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 AC006557.6-201ENST00000623071 864 ntBASIC20.15■□□□□ 0.82
PCDH9Q9HC56 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH9Q9HC56 AC004408.2-201ENST00000623613 2777 ntBASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms