Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 KRT16P2-201ENST00000414673 1423 ntBASIC14.74□□□□□ -0.05
AP1S3Q96PC3 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC14.74□□□□□ -0.05
AP1S3Q96PC3 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 NEFHP1-201ENST00000412845 2629 ntBASIC14.73□□□□□ -0.05
AP1S3Q96PC3 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC14.73□□□□□ -0.05
AP1S3Q96PC3 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 MIR2861-201ENST00000636310 90 ntBASIC14.72□□□□□ -0.05
AP1S3Q96PC3 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 AC005332.8-201ENST00000622750 2735 ntBASIC14.72□□□□□ -0.05
AP1S3Q96PC3 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
AP1S3Q96PC3 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 KRT87P-202ENST00000534226 1464 ntBASIC14.71□□□□□ -0.05
AP1S3Q96PC3 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC14.71□□□□□ -0.05
AP1S3Q96PC3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 AC116050.2-201ENST00000612102 1779 ntBASIC14.71□□□□□ -0.05
AP1S3Q96PC3 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC14.71□□□□□ -0.05
AP1S3Q96PC3 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms