Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP39Q53GS9 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.87■□□□□ 0.77
USP39Q53GS9 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP39Q53GS9 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP39Q53GS9 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP39Q53GS9 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP39Q53GS9 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
USP39Q53GS9 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
USP39Q53GS9 AC087388.1-201ENST00000571370 1112 ntBASIC19.87■□□□□ 0.77
USP39Q53GS9 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP39Q53GS9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP39Q53GS9 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.87■□□□□ 0.77
USP39Q53GS9 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
USP39Q53GS9 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP39Q53GS9 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
USP39Q53GS9 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP39Q53GS9 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP39Q53GS9 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP39Q53GS9 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
USP39Q53GS9 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP39Q53GS9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP39Q53GS9 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP39Q53GS9 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP39Q53GS9 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.86■□□□□ 0.77
USP39Q53GS9 AC104076.2-201ENST00000448912 469 ntBASIC19.86■□□□□ 0.77
USP39Q53GS9 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.86■□□□□ 0.77
USP39Q53GS9 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP39Q53GS9 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.86■□□□□ 0.77
USP39Q53GS9 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
USP39Q53GS9 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.86■□□□□ 0.77
USP39Q53GS9 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.86■□□□□ 0.77
USP39Q53GS9 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP39Q53GS9 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
USP39Q53GS9 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.86■□□□□ 0.77
USP39Q53GS9 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP39Q53GS9 AP006587.1-201ENST00000534129 1502 ntBASIC19.86■□□□□ 0.77
USP39Q53GS9 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.85■□□□□ 0.77
USP39Q53GS9 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.85■□□□□ 0.77
USP39Q53GS9 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
USP39Q53GS9 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.85■□□□□ 0.77
USP39Q53GS9 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP39Q53GS9 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP39Q53GS9 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP39Q53GS9 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.85■□□□□ 0.77
USP39Q53GS9 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
USP39Q53GS9 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
USP39Q53GS9 AC026271.3-201ENST00000571884 352 ntBASIC19.85■□□□□ 0.77
USP39Q53GS9 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.85■□□□□ 0.77
USP39Q53GS9 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.85■□□□□ 0.77
USP39Q53GS9 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.85■□□□□ 0.77
USP39Q53GS9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.85■□□□□ 0.77
USP39Q53GS9 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP39Q53GS9 AC007225.1-201ENST00000566331 1836 ntBASIC19.85■□□□□ 0.77
USP39Q53GS9 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP39Q53GS9 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.85■□□□□ 0.77
USP39Q53GS9 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
USP39Q53GS9 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP39Q53GS9 KRT8P17-201ENST00000453110 1448 ntBASIC19.85■□□□□ 0.77
USP39Q53GS9 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.84■□□□□ 0.77
USP39Q53GS9 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.84■□□□□ 0.77
USP39Q53GS9 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.84■□□□□ 0.77
USP39Q53GS9 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
USP39Q53GS9 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.84■□□□□ 0.77
USP39Q53GS9 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.84■□□□□ 0.77
USP39Q53GS9 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
USP39Q53GS9 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.84■□□□□ 0.77
USP39Q53GS9 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.84■□□□□ 0.77
USP39Q53GS9 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.84■□□□□ 0.77
USP39Q53GS9 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
USP39Q53GS9 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP39Q53GS9 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.84■□□□□ 0.77
USP39Q53GS9 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.83■□□□□ 0.77
USP39Q53GS9 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
USP39Q53GS9 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP39Q53GS9 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.83■□□□□ 0.77
USP39Q53GS9 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP39Q53GS9 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP39Q53GS9 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.83■□□□□ 0.77
USP39Q53GS9 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.83■□□□□ 0.77
USP39Q53GS9 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
USP39Q53GS9 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.83■□□□□ 0.77
USP39Q53GS9 EGLN1P1-201ENST00000531623 762 ntBASIC19.83■□□□□ 0.77
USP39Q53GS9 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms