Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC58Q4VC31 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC58Q4VC31 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC58Q4VC31 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC58Q4VC31 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC58Q4VC31 YBX1P1-201ENST00000445822 960 ntBASIC17.43■□□□□ 0.38
CCDC58Q4VC31 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CCDC58Q4VC31 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC17.43■□□□□ 0.38
CCDC58Q4VC31 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC58Q4VC31 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
CCDC58Q4VC31 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC58Q4VC31 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC58Q4VC31 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CCDC58Q4VC31 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC58Q4VC31 HCG11-201ENST00000411553 5696 ntBASIC17.41■□□□□ 0.38
CCDC58Q4VC31 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 KRT18P14-201ENST00000534205 1250 ntBASIC17.41■□□□□ 0.38
CCDC58Q4VC31 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC58Q4VC31 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 MYCNOS-205ENST00000641950 531 ntBASIC17.4■□□□□ 0.38
CCDC58Q4VC31 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC58Q4VC31 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC58Q4VC31 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.39■□□□□ 0.38
CCDC58Q4VC31 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC58Q4VC31 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC58Q4VC31 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.38
CCDC58Q4VC31 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC58Q4VC31 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms