Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 MAN2A2-201ENST00000360468 6268 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.794e-9■■□□□ 11.9
LSM11P83369 MAN2A2-215ENST00000559704 449 ntTSL 37.53□□□□□ -1.24e-9■■□□□ 11.9
LSM11P83369 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.591e-15■■□□□ 11.9
LSM11P83369 GATA1-201ENST00000376665 1140 ntTSL 5 BASIC10.8□□□□□ -0.681e-15■■□□□ 11.9
LSM11P83369 PABPC1L-208ENST00000372826 854 ntTSL 510.21□□□□□ -0.771e-7■■□□□ 11.9
LSM11P83369 PABPC1L-206ENST00000372822 536 ntTSL 55.89□□□□□ -1.471e-7■■□□□ 11.9
LSM11P83369 PRPSAP1-211ENST00000588364 1004 ntTSL 510.38□□□□□ -0.754e-11■■□□□ 11.9
LSM11P83369 RBM39-203ENST00000361162 2831 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.557e-9■■□□□ 11.8
LSM11P83369 RBM39-206ENST00000403542 2883 ntTSL 211.47□□□□□ -0.577e-9■■□□□ 11.8
LSM11P83369 RBM39-202ENST00000338163 2792 ntTSL 211.22□□□□□ -0.617e-9■■□□□ 11.8
LSM11P83369 RBM39-245ENST00000639702 5914 ntTSL 510.72□□□□□ -0.697e-9■■□□□ 11.8
LSM11P83369 RBM39-223ENST00000463004 4580 ntTSL 510.38□□□□□ -0.757e-9■■□□□ 11.8
LSM11P83369 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.597e-9■■□□□ 11.8
LSM11P83369 RBM39-221ENST00000461283 2415 ntTSL 53.87□□□□□ -1.797e-9■■□□□ 11.8
LSM11P83369 ENGASE-201ENST00000300682 4626 ntTSL 512.23□□□□□ -0.456e-7■■□□□ 11.8
LSM11P83369 MAPK8IP3-208ENST00000564868 870 ntTSL 315.7■□□□□ 0.17e-7■■□□□ 11.8
LSM11P83369 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.1■□□□□ 0.494e-8■■□□□ 11.8
LSM11P83369 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.384e-8■■□□□ 11.8
LSM11P83369 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.234e-8■■□□□ 11.8
LSM11P83369 LIMD2-203ENST00000578067 2019 ntTSL 1 (best)25.73■■□□□ 1.712e-6■■□□□ 11.8
LSM11P83369 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.952e-6■■□□□ 11.8
LSM11P83369 MAN2C1-240ENST00000569176 966 ntTSL 218.45■□□□□ 0.542e-7■■□□□ 11.8
LSM11P83369 ECHDC2-225ENST00000544365 1335 ntTSL 517.91■□□□□ 0.462e-6■■□□□ 11.8
LSM11P83369 PAXX-206ENST00000492564 701 ntTSL 317.52■□□□□ 0.45e-8■■□□□ 11.8
LSM11P83369 PAXX-207ENST00000493968 958 ntTSL 1 (best)16.93■□□□□ 0.35e-8■■□□□ 11.8
LSM11P83369 PAXX-205ENST00000483807 705 ntTSL 516.51■□□□□ 0.235e-8■■□□□ 11.8
LSM11P83369 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.05■□□□□ 0.162e-6■■□□□ 11.8
LSM11P83369 MAN2C1-211ENST00000563368 755 ntTSL 316.01■□□□□ 0.152e-7■■□□□ 11.8
LSM11P83369 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.66■□□□□ 0.12e-6■■□□□ 11.8
LSM11P83369 PAXX-208ENST00000498095 1077 ntTSL 515.22■□□□□ 0.035e-8■■□□□ 11.8
LSM11P83369 PAXX-203ENST00000467845 744 ntTSL 215.2■□□□□ 0.025e-8■■□□□ 11.8
LSM11P83369 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.065e-8■■□□□ 11.8
LSM11P83369 PAXX-204ENST00000481187 794 ntTSL 313.95□□□□□ -0.182e-6■■□□□ 11.8
LSM11P83369 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.292e-6■■□□□ 11.8
LSM11P83369 ECHDC2-214ENST00000487851 471 ntTSL 312.22□□□□□ -0.452e-6■■□□□ 11.8
LSM11P83369 SULT1A2-205ENST00000534108 1540 ntTSL 211.9□□□□□ -0.52e-6■■□□□ 11.8
LSM11P83369 STRADA-251ENST00000640870 1687 ntTSL 511.88□□□□□ -0.512e-6■■□□□ 11.8
LSM11P83369 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.512e-6■■□□□ 11.8
LSM11P83369 SRSF5-219ENST00000557460 939 ntTSL 511.7□□□□□ -0.543e-9■■□□□ 11.8
LSM11P83369 SULT1A2-201ENST00000335715 1090 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.762e-6■■□□□ 11.8
LSM11P83369 SRSF5-213ENST00000556330 546 ntTSL 210.2□□□□□ -0.783e-9■■□□□ 11.8
LSM11P83369 ECHDC2-216ENST00000488268 631 ntTSL 39.55□□□□□ -0.882e-6■■□□□ 11.8
LSM11P83369 EXOC7-218ENST00000591724 353 ntTSL 59.41□□□□□ -0.92e-6■■□□□ 11.8
LSM11P83369 ARFGAP1-209ENST00000518794 2727 ntTSL 1 (best)17.26■□□□□ 0.351e-8■■□□□ 11.8
LSM11P83369 ARFGAP1-205ENST00000468975 2640 ntTSL 216.21■□□□□ 0.198e-9■■□□□ 11.8
LSM11P83369 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.12e-7■■□□□ 11.8
LSM11P83369 ARFGAP1-204ENST00000395285 2697 ntTSL 215.6■□□□□ 0.098e-9■■□□□ 11.8
LSM11P83369 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.34■□□□□ 0.052e-7■■□□□ 11.8
LSM11P83369 ARFGAP1-222ENST00000549076 913 ntTSL 214.62□□□□□ -0.072e-8■■□□□ 11.8
LSM11P83369 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.132e-7■■□□□ 11.8
LSM11P83369 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.192e-7■■□□□ 11.8
LSM11P83369 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.36□□□□□ -0.272e-7■■□□□ 11.8
LSM11P83369 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.555e-16■■□□□ 11.8
LSM11P83369 CDK5RAP3-229ENST00000583697 852 ntTSL 37.6□□□□□ -1.193e-9■■□□□ 11.8
LSM11P83369 CDK5RAP3-209ENST00000578663 949 ntTSL 36.39□□□□□ -1.393e-9■■□□□ 11.8
LSM11P83369 SUPT5H-210ENST00000598117 859 ntTSL 216.76■□□□□ 0.273e-6■■□□□ 11.8
LSM11P83369 MAMDC4-205ENST00000485732 4112 ntTSL 1 (best)12.96□□□□□ -0.332e-6■■□□□ 11.8
LSM11P83369 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.372e-6■■□□□ 11.8
LSM11P83369 MAMDC4-201ENST00000317446 3658 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.432e-6■■□□□ 11.8
LSM11P83369 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.82□□□□□ -0.042e-7■■□□□ 11.8
LSM11P83369 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.322e-7■■□□□ 11.8
LSM11P83369 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC12.54□□□□□ -0.42e-7■■□□□ 11.8
LSM11P83369 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.276e-8■■□□□ 11.8
LSM11P83369 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.174e-7■■□□□ 11.8
LSM11P83369 KIZ-205ENST00000611685 1915 ntAPPRIS ALT2 TSL 214.22□□□□□ -0.134e-7■■□□□ 11.8
LSM11P83369 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.324e-7■■□□□ 11.8
LSM11P83369 KIZ-208ENST00000616848 1875 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.44e-7■■□□□ 11.8
LSM11P83369 KIZ-214ENST00000621366 1397 ntAPPRIS ALT2 TSL 1 (best)10.19□□□□□ -0.784e-7■■□□□ 11.8
LSM11P83369 KIZ-210ENST00000619189 2130 ntAPPRIS P4 TSL 1 (best) BASIC10.11□□□□□ -0.794e-7■■□□□ 11.8
LSM11P83369 KIZ-201ENST00000419359 517 ntTSL 29.44□□□□□ -0.94e-7■■□□□ 11.8
LSM11P83369 KIZ-202ENST00000423272 190 ntTSL 37.3□□□□□ -1.244e-7■■□□□ 11.8
LSM11P83369 KIZ-207ENST00000616679 3856 ntAPPRIS ALT2 TSL 57.16□□□□□ -1.264e-7■■□□□ 11.8
LSM11P83369 KIZ-209ENST00000619179 1663 ntAPPRIS ALT2 TSL 57.04□□□□□ -1.284e-7■■□□□ 11.8
LSM11P83369 EIF4G1-230ENST00000460829 1804 ntTSL 218.39■□□□□ 0.532e-12■■□□□ 11.8
LSM11P83369 EIF4G1-233ENST00000475721 1271 ntTSL 217.19■□□□□ 0.342e-12■■□□□ 11.8
LSM11P83369 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC12.63□□□□□ -0.398e-8■■□□□ 11.8
LSM11P83369 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC12.14□□□□□ -0.478e-8■■□□□ 11.8
LSM11P83369 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC11.85□□□□□ -0.518e-8■■□□□ 11.8
LSM11P83369 EIF4G1-221ENST00000441154 4311 ntTSL 5 BASIC9.63□□□□□ -0.878e-8■■□□□ 11.8
LSM11P83369 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.38□□□□□ -0.112e-7■■□□□ 11.8
LSM11P83369 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.74□□□□□ -0.212e-7■■□□□ 11.8
LSM11P83369 CHRD-203ENST00000356534 1252 ntTSL 1 (best)17.71■□□□□ 0.438e-7■■□□□ 11.8
LSM11P83369 ANKZF1-218ENST00000477479 2940 ntTSL 1 (best)13.56□□□□□ -0.243e-8■■□□□ 11.8
LSM11P83369 ANKZF1-211ENST00000463792 3245 ntTSL 213.52□□□□□ -0.243e-8■■□□□ 11.8
LSM11P83369 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.343e-8■■□□□ 11.8
LSM11P83369 ANKZF1-202ENST00000409849 2155 ntTSL 1 (best) BASIC11.76□□□□□ -0.533e-8■■□□□ 11.8
LSM11P83369 ANKZF1-203ENST00000410034 2486 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.63e-8■■□□□ 11.8
LSM11P83369 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.48■□□□□ 0.556e-8■■□□□ 11.8
LSM11P83369 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.75■□□□□ 0.436e-8■■□□□ 11.8
LSM11P83369 CCT5-203ENST00000503026 1933 ntTSL 2 BASIC10.48□□□□□ -0.736e-8■■□□□ 11.8
LSM11P83369 CCT5-213ENST00000515390 1728 ntTSL 2 BASIC8.26□□□□□ -1.096e-8■■□□□ 11.8
LSM11P83369 CCT5-201ENST00000280326 3675 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.256e-8■■□□□ 11.8
LSM11P83369 SFPQ-207ENST00000471991 440 ntTSL 212.06□□□□□ -0.481e-7■■□□□ 11.8
LSM11P83369 HSPG2-211ENST00000486901 3586 ntTSL 211.93□□□□□ -0.54e-6■■□□□ 11.8
LSM11P83369 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.24e-6■■□□□ 11.8
LSM11P83369 RBM39-227ENST00000470563 384 ntTSL 39.99□□□□□ -0.813e-18■■□□□ 11.8
LSM11P83369 SFPQ-208ENST00000485365 693 ntTSL 213.26□□□□□ -0.291e-7■■□□□ 11.8
LSM11P83369 SFPQ-203ENST00000466213 1431 ntTSL 1 (best)8.78□□□□□ -11e-7■■□□□ 11.8
LSM11P83369 SFPQ-204ENST00000466745 662 ntTSL 28.67□□□□□ -1.021e-7■■□□□ 11.8
LSM11P83369 SFPQ-206ENST00000470472 874 ntTSL 57.47□□□□□ -1.211e-7■■□□□ 11.8
Retrieved 100 of 11,495 protein–RNA pairs in 68.4 ms