RNA–Protein interactions for RNA: ENST00000470563.5

RBM39-227, Transcript of RNA binding motif protein 39, humanhuman

TSL 3

Gene RBM39, Length 384 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-227ENST00000470563 CHIC1Q5VXU3 224 aa22.76■■□□□ 1.23
RBM39-227ENST00000470563 AEBP2Q6ZN18 517 aaPredicted RBP22.59■■□□□ 1.21
RBM39-227ENST00000470563 PHF23Q9BUL5 403 aaPredicted RBP20■□□□□ 0.79
RBM39-227ENST00000470563 SENP3Q9H4L4 574 aaPredicted RBP19.19■□□□□ 0.66
RBM39-227ENST00000470563 PLPPR3Q6T4P5 718 aa18.75■□□□□ 0.59
RBM39-227ENST00000470563 FOXD1Q16676 465 aa17.63■□□□□ 0.41
RBM39-227ENST00000470563 PPP6R1Q9UPN7 881 aa17.38■□□□□ 0.37
RBM39-227ENST00000470563 ADRA2BP18089 450 aa17.35■□□□□ 0.37
RBM39-227ENST00000470563 KCNA4P22459 653 aa16.76■□□□□ 0.27
RBM39-227ENST00000470563 PIAS4Q8N2W9 510 aaPredicted RBP16.73■□□□□ 0.27
RBM39-227ENST00000470563 PPP4R3CPQ6ZMV5 832 aa16.52■□□□□ 0.24
RBM39-227ENST00000470563 NCBP3Q53F19 620 aaKnown RBP16.33■□□□□ 0.2
RBM39-227ENST00000470563 MSH5O43196 834 aa16.15■□□□□ 0.18
RBM39-227ENST00000470563 EHMT2Q96KQ7 1210 aa16.12■□□□□ 0.17
RBM39-227ENST00000470563 SLC4A1APQ9BWU0 796 aaKnown RBP16.09■□□□□ 0.17
RBM39-227ENST00000470563 SCAF1Q9H7N4 1312 aaKnown RBP16.06■□□□□ 0.16
RBM39-227ENST00000470563 NPM3O75607 178 aaKnown RBP16.03■□□□□ 0.16
RBM39-227ENST00000470563 CNKSR2Q8WXI2 1034 aa16.01■□□□□ 0.15
RBM39-227ENST00000470563 DNAJC5BQ9UF47 199 aa15.88■□□□□ 0.13
RBM39-227ENST00000470563 CSRNP3Q8WYN3 585 aa15.87■□□□□ 0.13
RBM39-227ENST00000470563 RNF216Q9NWF9 866 aaPredicted RBP15.58■□□□□ 0.08
RBM39-227ENST00000470563 MAPK8IP2Q13387 824 aaPredicted RBP15.53■□□□□ 0.08
RBM39-227ENST00000470563 ZBTB22O15209 634 aa15.44■□□□□ 0.06
RBM39-227ENST00000470563 DMRT2Q9Y5R5 561 aa15.43■□□□□ 0.06
RBM39-227ENST00000470563 HOXD11P31277 338 aaPredicted RBP15.39■□□□□ 0.05
RBM39-227ENST00000470563 FOXD4L1Q9NU39 408 aa15.36■□□□□ 0.05
RBM39-227ENST00000470563 POTEDQ86YR6 584 aa15.34■□□□□ 0.05
RBM39-227ENST00000470563 SLC4A2P04920 1241 aa15□□□□□ -0.01
RBM39-227ENST00000470563 ATXN8OSP0DMR3 200 aa14.92□□□□□ -0.02
RBM39-227ENST00000470563 MYCNP04198 464 aaPredicted RBP14.87□□□□□ -0.03
RBM39-227ENST00000470563 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.51□□□□□ -0.09
RBM39-227ENST00000470563 HNRNPUL2Q1KMD3 747 aaKnown RBP14.51□□□□□ -0.09
RBM39-227ENST00000470563 SAMD1Q6SPF0 538 aaPredicted RBP14.46□□□□□ -0.09
RBM39-227ENST00000470563 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.45□□□□□ -0.13e-12■□□□□ 9.6
RBM39-227ENST00000470563 DCAF8L1A6NGE4 600 aa14.39□□□□□ -0.11
RBM39-227ENST00000470563 U3KPZ7 1027 aaPredicted RBP14.38□□□□□ -0.11
RBM39-227ENST00000470563 ATF5Q9Y2D1 282 aaPredicted RBP14.27□□□□□ -0.13
RBM39-227ENST00000470563 APLP2Q06481 763 aa14.24□□□□□ -0.13
RBM39-227ENST00000470563 FKBP8Q14318 412 aa14.22□□□□□ -0.13
RBM39-227ENST00000470563 AMER1Q5JTC6 1135 aaPredicted RBP14.17□□□□□ -0.14
RBM39-227ENST00000470563 ZNF219Q9P2Y4 722 aaPredicted RBP14.06□□□□□ -0.16
RBM39-227ENST00000470563 RTN4Q9NQC3 1192 aaKnown RBP13.99□□□□□ -0.17
RBM39-227ENST00000470563 RNF39Q9H2S5 420 aa13.87□□□□□ -0.19
RBM39-227ENST00000470563 PROM2Q8N271 834 aa13.8□□□□□ -0.2
RBM39-227ENST00000470563 C1QBPQ07021 282 aaKnown RBP13.78□□□□□ -0.2
RBM39-227ENST00000470563 MKRN4PQ13434 485 aaPredicted RBP13.76□□□□□ -0.21
RBM39-227ENST00000470563 FBXO3Q9UK99 471 aa13.73□□□□□ -0.21
RBM39-227ENST00000470563 FBLN2P98095 1184 aa13.72□□□□□ -0.21
RBM39-227ENST00000470563 SPDYE4A6NLX3 237 aa13.71□□□□□ -0.21
RBM39-227ENST00000470563 SPINK5Q9NQ38 1064 aaPredicted RBP13.69□□□□□ -0.22
RBM39-227ENST00000470563 SLC24A1O60721 1099 aa13.66□□□□□ -0.22
RBM39-227ENST00000470563 CACNB1Q02641 598 aaPredicted RBP13.65□□□□□ -0.22
RBM39-227ENST00000470563 ZBTB12Q9Y330 459 aaPredicted RBP13.65□□□□□ -0.22
RBM39-227ENST00000470563 TRHP20396 242 aaPredicted RBP13.63□□□□□ -0.23
RBM39-227ENST00000470563 POLA2Q14181 598 aa13.62□□□□□ -0.23
RBM39-227ENST00000470563 CAPN15O75808 1086 aa13.58□□□□□ -0.24
RBM39-227ENST00000470563 VASPP50552 380 aaPredicted RBP13.46□□□□□ -0.25
RBM39-227ENST00000470563 DSG3P32926 999 aa13.36□□□□□ -0.27
RBM39-227ENST00000470563 ABCB7O75027 752 aa13.32□□□□□ -0.28
RBM39-227ENST00000470563 SPDYE2BA6NHP3 402 aa13.29□□□□□ -0.28
RBM39-227ENST00000470563 SPDYE6P0CI01 402 aa13.29□□□□□ -0.28
RBM39-227ENST00000470563 SPDYE2Q495Y8 402 aa13.29□□□□□ -0.28
RBM39-227ENST00000470563 IFNLR1Q8IU57 520 aaPredicted RBP13.28□□□□□ -0.28
RBM39-227ENST00000470563 SSUH2Q9Y2M2 353 aa13.27□□□□□ -0.29
RBM39-227ENST00000470563 STAG3Q9UJ98 1225 aa13.23□□□□□ -0.29
RBM39-227ENST00000470563 ZNF692Q9BU19 519 aaPredicted RBP13.18□□□□□ -0.3
RBM39-227ENST00000470563 OSCARQ8IYS5 282 aa13.13□□□□□ -0.31
RBM39-227ENST00000470563 PKD2Q13563 968 aa13.09□□□□□ -0.31
RBM39-227ENST00000470563 SPOCK2Q92563 424 aa13.06□□□□□ -0.32
RBM39-227ENST00000470563 PLCB2Q00722 1185 aa13.02□□□□□ -0.33
RBM39-227ENST00000470563 PABPN1Q86U42 306 aaKnown RBP eCLIP13.02□□□□□ -0.339e-8■□□□□ 8.6
RBM39-227ENST00000470563 KLHL34Q8N239 644 aa12.93□□□□□ -0.34
RBM39-227ENST00000470563 ZBTB47Q9UFB7 747 aaPredicted RBP12.93□□□□□ -0.34
RBM39-227ENST00000470563 PLCD3Q8N3E9 789 aa12.91□□□□□ -0.34
RBM39-227ENST00000470563 MIER1Q8N108 512 aa12.86□□□□□ -0.35
RBM39-227ENST00000470563 PLEKHG5O94827 1062 aa12.85□□□□□ -0.35
RBM39-227ENST00000470563 ECM2O94769 699 aaPredicted RBP12.83□□□□□ -0.36
RBM39-227ENST00000470563 TRIM41Q8WV44 630 aa12.82□□□□□ -0.36
RBM39-227ENST00000470563 BBXQ8WY36 941 aaPredicted RBP12.8□□□□□ -0.36
RBM39-227ENST00000470563 RBM42Q9BTD8 480 aaKnown RBP12.79□□□□□ -0.36
RBM39-227ENST00000470563 DCAF8L2P0C7V8 631 aa12.75□□□□□ -0.37
RBM39-227ENST00000470563 AKT1S1Q96B36 256 aa12.75□□□□□ -0.37
RBM39-227ENST00000470563 VSIG10Q8N0Z9 540 aa12.71□□□□□ -0.37
RBM39-227ENST00000470563 SPDYE1Q8NFV5 336 aaPredicted RBP12.71□□□□□ -0.37
RBM39-227ENST00000470563 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.71□□□□□ -0.37
RBM39-227ENST00000470563 RGL2O15211 777 aa12.69□□□□□ -0.38
RBM39-227ENST00000470563 NPM1P06748 294 aaKnown RBP eCLIP12.66□□□□□ -0.38
RBM39-227ENST00000470563 HAP1P54257 671 aaPredicted RBP12.65□□□□□ -0.38
RBM39-227ENST00000470563 GSE1Q14687 1217 aa12.65□□□□□ -0.38
RBM39-227ENST00000470563 DNAJC5Q9H3Z4 198 aa12.65□□□□□ -0.38
RBM39-227ENST00000470563 NUBP1P53384 320 aa12.61□□□□□ -0.39
RBM39-227ENST00000470563 CIZ1Q9ULV3 898 aaPredicted RBP12.59□□□□□ -0.39
RBM39-227ENST00000470563 HS6ST3Q8IZP7 471 aa12.56□□□□□ -0.4
RBM39-227ENST00000470563 MNX1P50219 401 aaPredicted RBP12.54□□□□□ -0.4
RBM39-227ENST00000470563 CREBZFQ9NS37 354 aa12.54□□□□□ -0.4
RBM39-227ENST00000470563 REM2Q8IYK8 340 aaPredicted RBP12.53□□□□□ -0.4
RBM39-227ENST00000470563 TAOK2Q9UL54 1235 aa12.53□□□□□ -0.4
RBM39-227ENST00000470563 CHRM1P11229 460 aaPredicted RBP12.52□□□□□ -0.41
RBM39-227ENST00000470563 SPRYD3Q8NCJ5 442 aa12.52□□□□□ -0.41
RBM39-227ENST00000470563 PRR29P0C7W0 189 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms