Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
PTPN6P29350 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
PTPN6P29350 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
PTPN6P29350 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
PTPN6P29350 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.54■□□□□ 0.56
PTPN6P29350 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.54■□□□□ 0.56
PTPN6P29350 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.54■□□□□ 0.56
PTPN6P29350 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
PTPN6P29350 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
PTPN6P29350 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PTPN6P29350 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN6P29350 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.54■□□□□ 0.56
PTPN6P29350 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN6P29350 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.53■□□□□ 0.56
PTPN6P29350 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.53■□□□□ 0.56
PTPN6P29350 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN6P29350 LINC01465-201ENST00000408887 1940 ntBASIC18.53■□□□□ 0.56
PTPN6P29350 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.53■□□□□ 0.56
PTPN6P29350 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN6P29350 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN6P29350 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
PTPN6P29350 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PTPN6P29350 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN6P29350 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN6P29350 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PTPN6P29350 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.53■□□□□ 0.56
PTPN6P29350 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.53■□□□□ 0.56
PTPN6P29350 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.53■□□□□ 0.56
PTPN6P29350 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN6P29350 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN6P29350 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.53■□□□□ 0.56
PTPN6P29350 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN6P29350 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN6P29350 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.53■□□□□ 0.56
PTPN6P29350 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
PTPN6P29350 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
PTPN6P29350 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN6P29350 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.53■□□□□ 0.56
PTPN6P29350 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN6P29350 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
PTPN6P29350 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN6P29350 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN6P29350 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.52■□□□□ 0.56
PTPN6P29350 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.56
PTPN6P29350 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN6P29350 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN6P29350 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN6P29350 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN6P29350 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN6P29350 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN6P29350 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.52■□□□□ 0.56
PTPN6P29350 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.52■□□□□ 0.56
PTPN6P29350 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
PTPN6P29350 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.52■□□□□ 0.56
PTPN6P29350 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN6P29350 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN6P29350 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN6P29350 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.52■□□□□ 0.56
PTPN6P29350 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTPN6P29350 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.52■□□□□ 0.55
PTPN6P29350 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.55
PTPN6P29350 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.52■□□□□ 0.55
PTPN6P29350 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.52■□□□□ 0.55
PTPN6P29350 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.52■□□□□ 0.55
PTPN6P29350 AC018553.1-201ENST00000616682 1458 ntBASIC18.52■□□□□ 0.55
PTPN6P29350 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
PTPN6P29350 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.52■□□□□ 0.55
PTPN6P29350 AC116351.2-201ENST00000606540 1585 ntBASIC18.51■□□□□ 0.55
PTPN6P29350 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
PTPN6P29350 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN6P29350 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN6P29350 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN6P29350 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN6P29350 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN6P29350 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.51■□□□□ 0.55
PTPN6P29350 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN6P29350 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN6P29350 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN6P29350 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.51■□□□□ 0.55
PTPN6P29350 RNA5SP413-201ENST00000516373 109 ntBASIC18.51■□□□□ 0.55
PTPN6P29350 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.51■□□□□ 0.55
PTPN6P29350 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms