Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.217e-9■■■□□ 15
YBX3P16989 ATIC-211ENST00000467388 714 ntTSL 27.66□□□□□ -1.182e-11■■■□□ 15
YBX3P16989 ATIC-213ENST00000479093 772 ntTSL 26.79□□□□□ -1.322e-11■■■□□ 15
YBX3P16989 ATIC-203ENST00000426233 713 ntTSL 26.77□□□□□ -1.332e-11■■■□□ 15
YBX3P16989 POLR1B-209ENST00000448770 2494 ntTSL 1 (best)13.83□□□□□ -0.23e-6■■■□□ 15
YBX3P16989 POLR1B-201ENST00000263331 4558 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.373e-6■■■□□ 15
YBX3P16989 POLR1B-216ENST00000537335 4961 ntTSL 2 BASIC11.67□□□□□ -0.543e-6■■■□□ 15
YBX3P16989 POLR1B-202ENST00000333990 4376 ntTSL 1 (best)11.62□□□□□ -0.553e-6■■■□□ 15
YBX3P16989 POLR1B-217ENST00000541869 5059 ntTSL 2 BASIC10.78□□□□□ -0.683e-6■■■□□ 15
YBX3P16989 POLR1B-204ENST00000417433 3836 ntTSL 2 BASIC9.27□□□□□ -0.923e-6■■■□□ 15
YBX3P16989 POLR1B-203ENST00000409894 4457 ntTSL 1 (best) BASIC9.22□□□□□ -0.933e-6■■■□□ 15
YBX3P16989 IPO5-213ENST00000479736 668 ntTSL 27.58□□□□□ -1.22e-7■■■□□ 15
YBX3P16989 IPO5-226ENST00000493492 474 ntTSL 37.56□□□□□ -1.22e-7■■■□□ 15
YBX3P16989 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.882e-7■■■□□ 15
YBX3P16989 OGDH-208ENST00000459672 601 ntTSL 415.11■□□□□ 0.016e-6■■■□□ 15
YBX3P16989 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC25.13■■□□□ 1.615e-6■■■□□ 15
YBX3P16989 ICAM1-204ENST00000588645 581 ntTSL 220.22■□□□□ 0.835e-6■■■□□ 15
YBX3P16989 ICAM1-201ENST00000264832 3252 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.715e-6■■■□□ 15
YBX3P16989 RNF182-202ENST00000423553 633 ntTSL 230.8■■■□□ 2.526e-8■■■□□ 15
YBX3P16989 RNF182-203ENST00000471906 557 ntTSL 429.42■■■□□ 2.36e-8■■■□□ 15
YBX3P16989 RNF182-201ENST00000420478 826 ntTSL 1 (best)10.15□□□□□ -0.786e-8■■■□□ 15
YBX3P16989 RNF182-205ENST00000488763 646 ntTSL 47.65□□□□□ -1.186e-8■■■□□ 15
YBX3P16989 UBE2I-215ENST00000567074 884 ntTSL 1 (best)25.95■■□□□ 1.741e-6■■■□□ 15
YBX3P16989 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC25.1■■□□□ 1.611e-6■■■□□ 15
YBX3P16989 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC24.34■■□□□ 1.491e-8■■■□□ 15
YBX3P16989 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.831e-8■■■□□ 15
YBX3P16989 HILPDA-204ENST00000481454 1370 ntTSL 220.13■□□□□ 0.811e-8■■■□□ 15
YBX3P16989 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.791e-8■■■□□ 15
YBX3P16989 HILPDA-203ENST00000466473 904 ntTSL 519.33■□□□□ 0.681e-8■■■□□ 15
YBX3P16989 AC010655.2-201ENST00000493710 662 ntTSL 3 BASIC9.94□□□□□ -0.821e-8■■■□□ 15
YBX3P16989 ANKHD1-214ENST00000465435 977 ntTSL 212.04□□□□□ -0.481e-9■■■□□ 15
YBX3P16989 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC22.37■■□□□ 1.176e-6■■■□□ 15
YBX3P16989 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.146e-6■■■□□ 15
YBX3P16989 THAP3-206ENST00000484669 744 ntTSL 522.18■■□□□ 1.146e-6■■■□□ 15
YBX3P16989 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.886e-6■■■□□ 15
YBX3P16989 THAP3-208ENST00000487819 840 ntTSL 219.01■□□□□ 0.636e-6■■■□□ 15
YBX3P16989 THAP3-204ENST00000472925 983 ntAPPRIS ALT2 TSL 218.63■□□□□ 0.576e-6■■■□□ 15
YBX3P16989 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.16e-6■■■□□ 15
YBX3P16989 THAP3-205ENST00000480647 336 ntTSL 39.69□□□□□ -0.866e-6■■■□□ 15
YBX3P16989 AP000781.2-203ENST00000528835 533 ntTSL 322.52■■□□□ 1.23e-18■■■□□ 15
YBX3P16989 AP000781.2-202ENST00000529411 681 ntAPPRIS P1 TSL 4 BASIC13.21□□□□□ -0.293e-18■■■□□ 15
YBX3P16989 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.18■□□□□ 0.821e-6■■■□□ 15
YBX3P16989 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.391e-6■■■□□ 15
YBX3P16989 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.89■□□□□ 0.31e-6■■■□□ 15
YBX3P16989 GOLGA7-205ENST00000521417 809 ntTSL 28.09□□□□□ -1.113e-6■■■□□ 15
YBX3P16989 RPL4-217ENST00000569696 569 ntTSL 515.72■□□□□ 0.113e-55■■■□□ 15
YBX3P16989 RPL4-214ENST00000567229 2003 ntTSL 514.34□□□□□ -0.113e-55■■■□□ 15
YBX3P16989 RPL4-215ENST00000568588 1864 ntTSL 2 BASIC13.93□□□□□ -0.183e-55■■■□□ 15
YBX3P16989 RPL4-201ENST00000307961 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.653e-55■■■□□ 15
YBX3P16989 RPL4-203ENST00000561775 1396 ntTSL 59.39□□□□□ -0.913e-55■■■□□ 15
YBX3P16989 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.285e-9■■■□□ 15
YBX3P16989 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC29.16■■■□□ 2.265e-9■■■□□ 15
YBX3P16989 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC28.69■■■□□ 2.185e-9■■■□□ 15
YBX3P16989 SLC39A3-205ENST00000589363 524 ntTSL 325.92■■□□□ 1.745e-9■■■□□ 15
YBX3P16989 SLC39A3-204ENST00000589166 491 ntTSL 213.44□□□□□ -0.265e-9■■■□□ 15
YBX3P16989 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC27.13■■□□□ 1.932e-19■■■□□ 15
YBX3P16989 PYCR2-204ENST00000467298 722 ntTSL 329.62■■■□□ 2.334e-11■■■□□ 15
YBX3P16989 PYCR2-205ENST00000472798 422 ntTSL 217.65■□□□□ 0.424e-11■■■□□ 15
YBX3P16989 PYCR2-207ENST00000489681 597 ntTSL 312.37□□□□□ -0.434e-11■■■□□ 15
YBX3P16989 QARS-251ENST00000637543 2074 ntTSL 514.03□□□□□ -0.161e-9■■■□□ 15
YBX3P16989 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC7.34□□□□□ -1.238e-8■■■□□ 15
YBX3P16989 AC004448.1-201ENST00000458332 883 ntBASIC29.37■■■□□ 2.292e-6■■■□□ 15
YBX3P16989 AC004448.4-203ENST00000456537 441 ntTSL 3 BASIC11.1□□□□□ -0.632e-6■■■□□ 15
YBX3P16989 AC004448.4-201ENST00000627753 580 ntTSL 511.09□□□□□ -0.632e-6■■■□□ 15
YBX3P16989 AC004448.4-202ENST00000629630 143 ntTSL 55.42□□□□□ -1.542e-6■■■□□ 15
YBX3P16989 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.491e-6■■■□□ 15
YBX3P16989 HEPH-204ENST00000425114 2459 ntTSL 511.16□□□□□ -0.622e-6■■■□□ 15
YBX3P16989 ST6GAL1-213ENST00000448449 1055 ntTSL 59.74□□□□□ -0.857e-7■■■□□ 15
YBX3P16989 ST6GAL1-209ENST00000442023 570 ntTSL 49.39□□□□□ -0.917e-7■■■□□ 15
YBX3P16989 AP001324.1-201ENST00000428553 399 ntBASIC6.26□□□□□ -1.413e-6■■■□□ 15
YBX3P16989 SLC6A8-202ENST00000413787 468 ntTSL 523.74■■□□□ 1.391e-28■■■□□ 15
YBX3P16989 SLC6A8-210ENST00000485324 2401 ntTSL 220.94■□□□□ 0.941e-28■■■□□ 15
YBX3P16989 SLC6A8-205ENST00000442457 523 ntTSL 316.18■□□□□ 0.181e-28■■■□□ 15
YBX3P16989 RPL13-205ENST00000467736 528 ntTSL 322.23■■□□□ 1.154e-55■■■□□ 15
YBX3P16989 RPL13-213ENST00000565571 568 ntTSL 219.58■□□□□ 0.724e-55■■■□□ 15
YBX3P16989 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.221e-6■■■□□ 15
YBX3P16989 TTC9C-201ENST00000294161 1833 ntTSL 1 (best)16.73■□□□□ 0.276e-10■■■□□ 15
YBX3P16989 TTC9C-203ENST00000530625 606 ntTSL 514.23□□□□□ -0.136e-10■■■□□ 15
YBX3P16989 TTC9C-205ENST00000532583 858 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.336e-10■■■□□ 15
YBX3P16989 TTC9C-202ENST00000316461 1080 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.686e-10■■■□□ 15
YBX3P16989 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.311e-6■■■□□ 15
YBX3P16989 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.143e-8■■■□□ 15
YBX3P16989 RPS19-204ENST00000598399 1172 ntTSL 517.6■□□□□ 0.419e-68■■■□□ 15
YBX3P16989 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.962e-10■■■□□ 15
YBX3P16989 PHPT1-205ENST00000492540 1316 ntTSL 1 (best)26.54■■□□□ 1.842e-10■■■□□ 15
YBX3P16989 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC24.29■■□□□ 1.482e-10■■■□□ 15
YBX3P16989 PHPT1-204ENST00000463215 627 ntTSL 219.66■□□□□ 0.742e-10■■■□□ 15
YBX3P16989 PHPT1-203ENST00000462205 619 ntTSL 318.85■□□□□ 0.612e-10■■■□□ 15
YBX3P16989 PHPT1-206ENST00000497413 618 ntTSL 218.26■□□□□ 0.512e-10■■■□□ 15
YBX3P16989 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.97■□□□□ 0.793e-6■■■□□ 15
YBX3P16989 CUL5-201ENST00000393094 6351 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.64e-8■■■□□ 15
YBX3P16989 CUL5-203ENST00000531427 3596 ntTSL 1 (best)9.13□□□□□ -0.954e-8■■■□□ 15
YBX3P16989 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.691e-9■■■□□ 15
YBX3P16989 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.431e-9■■■□□ 15
YBX3P16989 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.114e-6■■■□□ 14.9
YBX3P16989 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC20.09■□□□□ 0.811e-21■■■□□ 14.9
YBX3P16989 RPL34-201ENST00000394665 529 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.671e-65■■■□□ 14.9
YBX3P16989 RPL34-204ENST00000502534 560 ntAPPRIS P1 TSL 4 BASIC10.87□□□□□ -0.671e-65■■■□□ 14.9
YBX3P16989 RPL34-202ENST00000394667 441 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.111e-65■■■□□ 14.9
YBX3P16989 KARS-208ENST00000566772 644 ntTSL 27.39□□□□□ -1.231e-12■■■□□ 14.9
Retrieved 100 of 29,075 protein–RNA pairs in 797.9 ms