Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CDCA3Q99618 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDCA3Q99618 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.46■□□□□ 0.87
CDCA3Q99618 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CDCA3Q99618 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDCA3Q99618 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CDCA3Q99618 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDCA3Q99618 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDCA3Q99618 AC007225.1-201ENST00000566331 1836 ntBASIC20.46■□□□□ 0.87
CDCA3Q99618 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDCA3Q99618 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.46■□□□□ 0.87
CDCA3Q99618 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.46■□□□□ 0.87
CDCA3Q99618 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CDCA3Q99618 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.46■□□□□ 0.87
CDCA3Q99618 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.46■□□□□ 0.87
CDCA3Q99618 AP003041.3-201ENST00000527151 707 ntBASIC20.46■□□□□ 0.87
CDCA3Q99618 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.46■□□□□ 0.87
CDCA3Q99618 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.46■□□□□ 0.87
CDCA3Q99618 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CDCA3Q99618 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.46■□□□□ 0.87
CDCA3Q99618 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.46■□□□□ 0.87
CDCA3Q99618 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.45■□□□□ 0.86
CDCA3Q99618 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDCA3Q99618 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDCA3Q99618 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDCA3Q99618 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDCA3Q99618 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDCA3Q99618 VENTXP5-201ENST00000523979 775 ntBASIC20.45■□□□□ 0.86
CDCA3Q99618 AL691432.3-201ENST00000621860 400 ntBASIC20.45■□□□□ 0.86
CDCA3Q99618 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CDCA3Q99618 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CDCA3Q99618 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CDCA3Q99618 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDCA3Q99618 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDCA3Q99618 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDCA3Q99618 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CDCA3Q99618 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDCA3Q99618 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDCA3Q99618 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.44■□□□□ 0.86
CDCA3Q99618 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.44■□□□□ 0.86
CDCA3Q99618 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDCA3Q99618 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDCA3Q99618 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDCA3Q99618 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDCA3Q99618 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CDCA3Q99618 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDCA3Q99618 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.44■□□□□ 0.86
CDCA3Q99618 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDCA3Q99618 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDCA3Q99618 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDCA3Q99618 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CDCA3Q99618 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDCA3Q99618 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.44■□□□□ 0.86
CDCA3Q99618 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDCA3Q99618 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.44■□□□□ 0.86
CDCA3Q99618 CLEC4GP1-201ENST00000596555 870 ntBASIC20.44■□□□□ 0.86
CDCA3Q99618 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.44■□□□□ 0.86
CDCA3Q99618 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDCA3Q99618 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
CDCA3Q99618 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.44■□□□□ 0.86
CDCA3Q99618 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDCA3Q99618 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CDCA3Q99618 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDCA3Q99618 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDCA3Q99618 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDCA3Q99618 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDCA3Q99618 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDCA3Q99618 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDCA3Q99618 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.43■□□□□ 0.86
CDCA3Q99618 KRT18P38-201ENST00000449496 1282 ntBASIC20.43■□□□□ 0.86
CDCA3Q99618 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.43■□□□□ 0.86
CDCA3Q99618 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.43■□□□□ 0.86
CDCA3Q99618 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.43■□□□□ 0.86
CDCA3Q99618 NEK4P2-201ENST00000580004 1012 ntBASIC20.43■□□□□ 0.86
CDCA3Q99618 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CDCA3Q99618 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDCA3Q99618 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDCA3Q99618 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CDCA3Q99618 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDCA3Q99618 AL117328.2-201ENST00000624617 1940 ntBASIC20.43■□□□□ 0.86
CDCA3Q99618 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDCA3Q99618 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDCA3Q99618 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.42■□□□□ 0.86
CDCA3Q99618 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.42■□□□□ 0.86
CDCA3Q99618 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CDCA3Q99618 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDCA3Q99618 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDCA3Q99618 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDCA3Q99618 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CDCA3Q99618 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CDCA3Q99618 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.42■□□□□ 0.86
CDCA3Q99618 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.42■□□□□ 0.86
CDCA3Q99618 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.42■□□□□ 0.86
CDCA3Q99618 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.42■□□□□ 0.86
CDCA3Q99618 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.42■□□□□ 0.86
CDCA3Q99618 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.42■□□□□ 0.86
CDCA3Q99618 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.42■□□□□ 0.86
CDCA3Q99618 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.42■□□□□ 0.86
CDCA3Q99618 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CDCA3Q99618 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms