Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC22.69■■□□□ 1.22
KRT40Q6A162 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
KRT40Q6A162 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
KRT40Q6A162 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC22.69■■□□□ 1.22
KRT40Q6A162 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC22.69■■□□□ 1.22
KRT40Q6A162 AC120498.8-201ENST00000614275 531 ntBASIC22.69■■□□□ 1.22
KRT40Q6A162 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC22.69■■□□□ 1.22
KRT40Q6A162 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
KRT40Q6A162 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC22.69■■□□□ 1.22
KRT40Q6A162 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC22.68■■□□□ 1.22
KRT40Q6A162 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
KRT40Q6A162 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC22.68■■□□□ 1.22
KRT40Q6A162 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
KRT40Q6A162 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC22.68■■□□□ 1.22
KRT40Q6A162 AC007952.6-201ENST00000573168 2673 ntBASIC22.68■■□□□ 1.22
KRT40Q6A162 AC003957.1-201ENST00000625108 2673 ntBASIC22.68■■□□□ 1.22
KRT40Q6A162 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
KRT40Q6A162 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
KRT40Q6A162 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
KRT40Q6A162 AC093484.2-201ENST00000580996 2166 ntBASIC22.67■■□□□ 1.22
KRT40Q6A162 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC22.67■■□□□ 1.22
KRT40Q6A162 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
KRT40Q6A162 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
KRT40Q6A162 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 ABHD17AP6-201ENST00000458502 1044 ntBASIC22.67■■□□□ 1.22
KRT40Q6A162 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC22.67■■□□□ 1.22
KRT40Q6A162 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC22.67■■□□□ 1.22
KRT40Q6A162 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC22.67■■□□□ 1.22
KRT40Q6A162 MIR4497-201ENST00000583208 89 ntBASIC22.67■■□□□ 1.22
KRT40Q6A162 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC22.67■■□□□ 1.22
KRT40Q6A162 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC22.67■■□□□ 1.22
KRT40Q6A162 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
KRT40Q6A162 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC22.66■■□□□ 1.22
KRT40Q6A162 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC22.66■■□□□ 1.22
KRT40Q6A162 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC22.66■■□□□ 1.22
KRT40Q6A162 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
KRT40Q6A162 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC22.66■■□□□ 1.22
KRT40Q6A162 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
KRT40Q6A162 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
KRT40Q6A162 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
KRT40Q6A162 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC22.66■■□□□ 1.22
KRT40Q6A162 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC22.66■■□□□ 1.22
KRT40Q6A162 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC22.66■■□□□ 1.22
KRT40Q6A162 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
KRT40Q6A162 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
KRT40Q6A162 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
KRT40Q6A162 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC22.65■■□□□ 1.22
KRT40Q6A162 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
KRT40Q6A162 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
KRT40Q6A162 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
KRT40Q6A162 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
KRT40Q6A162 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
KRT40Q6A162 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
KRT40Q6A162 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC22.65■■□□□ 1.22
KRT40Q6A162 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
KRT40Q6A162 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC22.65■■□□□ 1.22
KRT40Q6A162 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC22.65■■□□□ 1.22
KRT40Q6A162 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC22.65■■□□□ 1.22
KRT40Q6A162 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC22.65■■□□□ 1.22
KRT40Q6A162 AC008403.3-201ENST00000598924 454 ntBASIC22.65■■□□□ 1.22
KRT40Q6A162 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
KRT40Q6A162 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms