Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 PLK5-205ENST00000642079 1969 ntBASIC18.81■□□□□ 0.6
COL28A1Q2UY09 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 AC117947.1-201ENST00000427448 529 ntBASIC18.81■□□□□ 0.6
COL28A1Q2UY09 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 HCG4P8-203ENST00000443049 980 ntBASIC18.81■□□□□ 0.6
COL28A1Q2UY09 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 AC004264.1-201ENST00000608354 794 ntBASIC18.81■□□□□ 0.6
COL28A1Q2UY09 GPALPP1-207ENST00000611650 899 ntBASIC18.81■□□□□ 0.6
COL28A1Q2UY09 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL28A1Q2UY09 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 PCED1CP-201ENST00000419887 785 ntBASIC18.8■□□□□ 0.6
COL28A1Q2UY09 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL28A1Q2UY09 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL28A1Q2UY09 AL391422.3-201ENST00000603791 2761 ntBASIC18.78■□□□□ 0.6
COL28A1Q2UY09 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 AC091390.4-202ENST00000476426 537 ntBASIC18.78■□□□□ 0.6
COL28A1Q2UY09 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.78■□□□□ 0.6
COL28A1Q2UY09 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms