Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.68■□□□□ 0.58
MSX2P35548 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.68■□□□□ 0.58
MSX2P35548 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
MSX2P35548 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.68■□□□□ 0.58
MSX2P35548 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
MSX2P35548 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
MSX2P35548 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.67■□□□□ 0.58
MSX2P35548 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
MSX2P35548 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.67■□□□□ 0.58
MSX2P35548 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.67■□□□□ 0.58
MSX2P35548 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.67■□□□□ 0.58
MSX2P35548 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.67■□□□□ 0.58
MSX2P35548 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.67■□□□□ 0.58
MSX2P35548 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.67■□□□□ 0.58
MSX2P35548 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX2P35548 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
MSX2P35548 AL390961.4-201ENST00000623958 2535 ntBASIC18.66■□□□□ 0.58
MSX2P35548 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.66■□□□□ 0.58
MSX2P35548 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
MSX2P35548 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.66■□□□□ 0.58
MSX2P35548 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.66■□□□□ 0.58
MSX2P35548 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
MSX2P35548 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
MSX2P35548 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
MSX2P35548 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
MSX2P35548 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC18.66■□□□□ 0.58
MSX2P35548 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 CDV3P1-201ENST00000471403 739 ntBASIC18.66■□□□□ 0.58
MSX2P35548 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.66■□□□□ 0.58
MSX2P35548 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.66■□□□□ 0.58
MSX2P35548 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
MSX2P35548 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
MSX2P35548 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.66■□□□□ 0.58
MSX2P35548 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
MSX2P35548 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.66■□□□□ 0.58
MSX2P35548 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
MSX2P35548 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
MSX2P35548 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 AC087633.2-202ENST00000565166 1439 ntBASIC18.66■□□□□ 0.58
MSX2P35548 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX2P35548 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX2P35548 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX2P35548 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX2P35548 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.65■□□□□ 0.58
MSX2P35548 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.65■□□□□ 0.58
MSX2P35548 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.65■□□□□ 0.58
MSX2P35548 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.65■□□□□ 0.58
MSX2P35548 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX2P35548 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX2P35548 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX2P35548 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.65■□□□□ 0.58
MSX2P35548 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.65■□□□□ 0.58
MSX2P35548 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.65■□□□□ 0.58
MSX2P35548 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.65■□□□□ 0.58
MSX2P35548 KRT18P20-201ENST00000548986 1279 ntBASIC18.65■□□□□ 0.58
MSX2P35548 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.65■□□□□ 0.58
MSX2P35548 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.65■□□□□ 0.58
MSX2P35548 PCDHB18P-201ENST00000524813 2368 ntBASIC18.65■□□□□ 0.58
MSX2P35548 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX2P35548 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX2P35548 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX2P35548 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX2P35548 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
MSX2P35548 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.65■□□□□ 0.58
MSX2P35548 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX2P35548 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
MSX2P35548 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms