Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.69■□□□□ 0.9
BDNFP23560 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BDNFP23560 AL355355.2-201ENST00000442321 338 ntBASIC20.69■□□□□ 0.9
BDNFP23560 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.69■□□□□ 0.9
BDNFP23560 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
BDNFP23560 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.69■□□□□ 0.9
BDNFP23560 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.69■□□□□ 0.9
BDNFP23560 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
BDNFP23560 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BDNFP23560 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
BDNFP23560 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.69■□□□□ 0.9
BDNFP23560 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BDNFP23560 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.69■□□□□ 0.9
BDNFP23560 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.69■□□□□ 0.9
BDNFP23560 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BDNFP23560 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
BDNFP23560 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
BDNFP23560 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BDNFP23560 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.68■□□□□ 0.9
BDNFP23560 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
BDNFP23560 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BDNFP23560 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
BDNFP23560 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BDNFP23560 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.68■□□□□ 0.9
BDNFP23560 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.68■□□□□ 0.9
BDNFP23560 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BDNFP23560 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
BDNFP23560 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
BDNFP23560 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.68■□□□□ 0.9
BDNFP23560 AP003071.4-201ENST00000562276 1284 ntBASIC20.68■□□□□ 0.9
BDNFP23560 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.68■□□□□ 0.9
BDNFP23560 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.68■□□□□ 0.9
BDNFP23560 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.68■□□□□ 0.9
BDNFP23560 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
BDNFP23560 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BDNFP23560 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BDNFP23560 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
BDNFP23560 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
BDNFP23560 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
BDNFP23560 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BDNFP23560 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BDNFP23560 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BDNFP23560 AL355075.4-201ENST00000554988 638 ntBASIC20.67■□□□□ 0.9
BDNFP23560 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.67■□□□□ 0.9
BDNFP23560 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.67■□□□□ 0.9
BDNFP23560 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
BDNFP23560 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BDNFP23560 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BDNFP23560 KRT16P1-201ENST00000399124 1418 ntBASIC20.67■□□□□ 0.9
BDNFP23560 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
BDNFP23560 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
BDNFP23560 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
BDNFP23560 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
BDNFP23560 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
BDNFP23560 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
BDNFP23560 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
BDNFP23560 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
BDNFP23560 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.66■□□□□ 0.9
BDNFP23560 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.66■□□□□ 0.9
BDNFP23560 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BDNFP23560 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.66■□□□□ 0.9
BDNFP23560 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.66■□□□□ 0.9
BDNFP23560 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BDNFP23560 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
BDNFP23560 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.66■□□□□ 0.9
BDNFP23560 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BDNFP23560 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
BDNFP23560 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BDNFP23560 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
BDNFP23560 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
BDNFP23560 SLC25A24-204ENST00000569674 2357 ntBASIC20.66■□□□□ 0.9
BDNFP23560 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
BDNFP23560 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
BDNFP23560 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
BDNFP23560 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BDNFP23560 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BDNFP23560 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.65■□□□□ 0.9
BDNFP23560 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BDNFP23560 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
BDNFP23560 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BDNFP23560 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
BDNFP23560 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.65■□□□□ 0.9
BDNFP23560 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
BDNFP23560 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BDNFP23560 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.65■□□□□ 0.9
BDNFP23560 NUDT16P1-203ENST00000513809 620 ntBASIC20.65■□□□□ 0.9
BDNFP23560 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.65■□□□□ 0.9
BDNFP23560 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.65■□□□□ 0.9
BDNFP23560 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.65■□□□□ 0.9
BDNFP23560 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.65■□□□□ 0.9
BDNFP23560 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.65■□□□□ 0.9
BDNFP23560 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BDNFP23560 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.65■□□□□ 0.9
BDNFP23560 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.64■□□□□ 0.9
BDNFP23560 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
BDNFP23560 KRT8P8-201ENST00000434750 1448 ntBASIC20.64■□□□□ 0.89
BDNFP23560 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.64■□□□□ 0.89
BDNFP23560 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
BDNFP23560 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.64■□□□□ 0.89
BDNFP23560 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms