Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS4BO75351 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS4BO75351 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
VPS4BO75351 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VPS4BO75351 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VPS4BO75351 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
VPS4BO75351 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4BO75351 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4BO75351 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
VPS4BO75351 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VPS4BO75351 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS4BO75351 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4BO75351 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
VPS4BO75351 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
VPS4BO75351 MIR718-201ENST00000390190 70 ntBASIC19.16■□□□□ 0.66
VPS4BO75351 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS4BO75351 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS4BO75351 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS4BO75351 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4BO75351 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS4BO75351 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4BO75351 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4BO75351 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
VPS4BO75351 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4BO75351 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4BO75351 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4BO75351 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS4BO75351 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4BO75351 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4BO75351 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4BO75351 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
VPS4BO75351 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS4BO75351 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VPS4BO75351 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
VPS4BO75351 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS4BO75351 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS4BO75351 AIRN-201ENST00000601203 4374 ntBASIC19.15■□□□□ 0.66
VPS4BO75351 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VPS4BO75351 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS4BO75351 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4BO75351 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS4BO75351 RNF165-205ENST00000588679 2904 ntBASIC19.14■□□□□ 0.66
VPS4BO75351 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS4BO75351 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
VPS4BO75351 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS4BO75351 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.14■□□□□ 0.65
VPS4BO75351 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
VPS4BO75351 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS4BO75351 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS4BO75351 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 HLA-G-202ENST00000376815 851 ntBASIC19.14■□□□□ 0.65
VPS4BO75351 HLA-G-203ENST00000376818 1127 ntBASIC19.14■□□□□ 0.65
VPS4BO75351 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS4BO75351 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS4BO75351 AP003097.1-201ENST00000530657 1135 ntBASIC19.14■□□□□ 0.65
VPS4BO75351 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS4BO75351 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS4BO75351 AC073648.6-201ENST00000641589 218 ntBASIC19.14■□□□□ 0.65
VPS4BO75351 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
VPS4BO75351 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.14■□□□□ 0.65
VPS4BO75351 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms