Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM13O60858 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.27■□□□□ 0.68
TRIM13O60858 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 AL355472.2-201ENST00000422958 438 ntBASIC19.27■□□□□ 0.68
TRIM13O60858 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 C2orf69P4-201ENST00000565394 541 ntBASIC19.27■□□□□ 0.68
TRIM13O60858 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
TRIM13O60858 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.27■□□□□ 0.67
TRIM13O60858 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM13O60858 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM13O60858 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM13O60858 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM13O60858 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM13O60858 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM13O60858 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM13O60858 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM13O60858 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM13O60858 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
TRIM13O60858 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM13O60858 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
TRIM13O60858 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM13O60858 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.26■□□□□ 0.67
TRIM13O60858 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.26■□□□□ 0.67
TRIM13O60858 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM13O60858 AL589743.5-201ENST00000616611 1050 ntBASIC19.26■□□□□ 0.67
TRIM13O60858 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM13O60858 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.26■□□□□ 0.67
TRIM13O60858 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM13O60858 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM13O60858 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
TRIM13O60858 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM13O60858 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
TRIM13O60858 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM13O60858 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM13O60858 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.25■□□□□ 0.67
TRIM13O60858 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM13O60858 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.25■□□□□ 0.67
TRIM13O60858 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM13O60858 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM13O60858 AC008694.1-202ENST00000636953 945 ntBASIC19.25■□□□□ 0.67
TRIM13O60858 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 AL138781.2-201ENST00000617896 1843 ntBASIC19.25■□□□□ 0.67
TRIM13O60858 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM13O60858 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM13O60858 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM13O60858 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM13O60858 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM13O60858 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM13O60858 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM13O60858 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM13O60858 CYP2T1P-201ENST00000432607 1285 ntBASIC19.24■□□□□ 0.67
TRIM13O60858 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.24■□□□□ 0.67
TRIM13O60858 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.24■□□□□ 0.67
TRIM13O60858 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TRIM13O60858 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM13O60858 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM13O60858 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM13O60858 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM13O60858 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM13O60858 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM13O60858 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM13O60858 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM13O60858 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM13O60858 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM13O60858 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
TRIM13O60858 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM13O60858 AC016769.1-201ENST00000409132 1010 ntBASIC19.23■□□□□ 0.67
TRIM13O60858 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM13O60858 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM13O60858 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM13O60858 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TRIM13O60858 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms