Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PRKNO60260 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.25■□□□□ 0.51
PRKNO60260 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.25■□□□□ 0.51
PRKNO60260 AP006587.1-201ENST00000534129 1502 ntBASIC18.25■□□□□ 0.51
PRKNO60260 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.25■□□□□ 0.51
PRKNO60260 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PRKNO60260 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PRKNO60260 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PRKNO60260 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PRKNO60260 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.25■□□□□ 0.51
PRKNO60260 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PRKNO60260 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.25■□□□□ 0.51
PRKNO60260 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.25■□□□□ 0.51
PRKNO60260 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
PRKNO60260 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PRKNO60260 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.25■□□□□ 0.51
PRKNO60260 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.25■□□□□ 0.51
PRKNO60260 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PRKNO60260 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PRKNO60260 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PRKNO60260 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PRKNO60260 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PRKNO60260 SLC25A24-204ENST00000569674 2357 ntBASIC18.25■□□□□ 0.51
PRKNO60260 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PRKNO60260 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PRKNO60260 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PRKNO60260 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.25■□□□□ 0.51
PRKNO60260 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKNO60260 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PRKNO60260 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
PRKNO60260 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.24■□□□□ 0.51
PRKNO60260 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PRKNO60260 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PRKNO60260 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.24■□□□□ 0.51
PRKNO60260 AL596275.1-201ENST00000423464 877 ntBASIC18.24■□□□□ 0.51
PRKNO60260 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKNO60260 KRT16P5-201ENST00000455284 522 ntBASIC18.24■□□□□ 0.51
PRKNO60260 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PRKNO60260 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.24■□□□□ 0.51
PRKNO60260 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PRKNO60260 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKNO60260 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
PRKNO60260 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.24■□□□□ 0.51
PRKNO60260 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKNO60260 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PRKNO60260 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PRKNO60260 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKNO60260 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PRKNO60260 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKNO60260 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKNO60260 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PRKNO60260 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKNO60260 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKNO60260 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PRKNO60260 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.23■□□□□ 0.51
PRKNO60260 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PRKNO60260 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.23■□□□□ 0.51
PRKNO60260 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.23■□□□□ 0.51
PRKNO60260 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PRKNO60260 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PRKNO60260 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PRKNO60260 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PRKNO60260 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PRKNO60260 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.23■□□□□ 0.51
PRKNO60260 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PRKNO60260 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PRKNO60260 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
PRKNO60260 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
PRKNO60260 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.23■□□□□ 0.51
PRKNO60260 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.23■□□□□ 0.51
PRKNO60260 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.23■□□□□ 0.51
PRKNO60260 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.23■□□□□ 0.51
PRKNO60260 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PRKNO60260 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.23■□□□□ 0.51
PRKNO60260 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PRKNO60260 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.23■□□□□ 0.51
PRKNO60260 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PRKNO60260 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PRKNO60260 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
PRKNO60260 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
PRKNO60260 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PRKNO60260 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PRKNO60260 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PRKNO60260 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PRKNO60260 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PRKNO60260 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
PRKNO60260 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
PRKNO60260 RPS2P55-201ENST00000397318 883 ntBASIC18.22■□□□□ 0.51
PRKNO60260 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PRKNO60260 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PRKNO60260 AC107956.1-201ENST00000494359 873 ntBASIC18.22■□□□□ 0.51
PRKNO60260 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.22■□□□□ 0.51
PRKNO60260 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.22■□□□□ 0.51
PRKNO60260 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
PRKNO60260 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.22■□□□□ 0.51
PRKNO60260 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
PRKNO60260 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PRKNO60260 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
PRKNO60260 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.22■□□□□ 0.51
PRKNO60260 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms