Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC26.41■■□□□ 1.82
MSH5O43196 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC26.41■■□□□ 1.82
MSH5O43196 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
MSH5O43196 KRASP1-201ENST00000407852 552 ntBASIC26.41■■□□□ 1.82
MSH5O43196 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC26.41■■□□□ 1.82
MSH5O43196 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
MSH5O43196 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
MSH5O43196 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
MSH5O43196 AC012309.1-203ENST00000585860 965 ntTSL 5 BASIC26.41■■□□□ 1.82
MSH5O43196 AC012306.2-201ENST00000609350 630 ntBASIC26.41■■□□□ 1.82
MSH5O43196 AC109809.1-201ENST00000619665 545 ntBASIC26.41■■□□□ 1.82
MSH5O43196 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
MSH5O43196 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
MSH5O43196 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC26.41■■□□□ 1.82
MSH5O43196 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC26.41■■□□□ 1.82
MSH5O43196 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
MSH5O43196 AC003102.1-202ENST00000563394 1796 ntBASIC26.41■■□□□ 1.82
MSH5O43196 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH5O43196 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH5O43196 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC26.4■■□□□ 1.82
MSH5O43196 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
MSH5O43196 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH5O43196 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
MSH5O43196 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC26.4■■□□□ 1.82
MSH5O43196 PRKY-204ENST00000533551 1019 ntBASIC26.4■■□□□ 1.82
MSH5O43196 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC26.4■■□□□ 1.82
MSH5O43196 AL158211.1-201ENST00000566763 763 ntBASIC26.4■■□□□ 1.82
MSH5O43196 CD177P1-201ENST00000606252 935 ntBASIC26.4■■□□□ 1.82
MSH5O43196 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC26.4■■□□□ 1.82
MSH5O43196 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH5O43196 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH5O43196 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
MSH5O43196 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH5O43196 AC018445.3-201ENST00000624177 1945 ntBASIC26.39■■□□□ 1.82
MSH5O43196 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
MSH5O43196 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
MSH5O43196 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH5O43196 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
MSH5O43196 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
MSH5O43196 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH5O43196 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH5O43196 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
MSH5O43196 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC26.39■■□□□ 1.82
MSH5O43196 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH5O43196 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC26.39■■□□□ 1.82
MSH5O43196 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC26.39■■□□□ 1.82
MSH5O43196 AC110285.5-201ENST00000611501 352 ntBASIC26.39■■□□□ 1.82
MSH5O43196 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
MSH5O43196 AC073314.1-201ENST00000568729 2216 ntBASIC26.39■■□□□ 1.81
MSH5O43196 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
MSH5O43196 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC26.39■■□□□ 1.81
MSH5O43196 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
MSH5O43196 AP005212.1-201ENST00000581547 1997 ntBASIC26.38■■□□□ 1.81
MSH5O43196 GABARAPL3-202ENST00000624044 1851 ntBASIC26.38■■□□□ 1.81
MSH5O43196 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC26.38■■□□□ 1.81
MSH5O43196 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH5O43196 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH5O43196 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH5O43196 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH5O43196 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH5O43196 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC26.38■■□□□ 1.81
MSH5O43196 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
MSH5O43196 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC26.38■■□□□ 1.81
MSH5O43196 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH5O43196 AC007322.3-201ENST00000426526 701 ntBASIC26.38■■□□□ 1.81
MSH5O43196 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC26.38■■□□□ 1.81
MSH5O43196 AC133681.1-201ENST00000465482 601 ntBASIC26.38■■□□□ 1.81
MSH5O43196 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC26.38■■□□□ 1.81
MSH5O43196 PENK-204ENST00000518770 863 ntTSL 2 BASIC26.38■■□□□ 1.81
MSH5O43196 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC26.38■■□□□ 1.81
MSH5O43196 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC26.38■■□□□ 1.81
MSH5O43196 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC26.38■■□□□ 1.81
MSH5O43196 SNX21-213ENST00000614929 587 ntTSL 5 BASIC26.38■■□□□ 1.81
MSH5O43196 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC26.38■■□□□ 1.81
MSH5O43196 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH5O43196 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC26.38■■□□□ 1.81
MSH5O43196 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
MSH5O43196 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC26.38■■□□□ 1.81
MSH5O43196 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC26.38■■□□□ 1.81
MSH5O43196 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
MSH5O43196 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC26.37■■□□□ 1.81
MSH5O43196 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC26.37■■□□□ 1.81
MSH5O43196 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
MSH5O43196 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
MSH5O43196 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC26.37■■□□□ 1.81
MSH5O43196 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
MSH5O43196 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC26.37■■□□□ 1.81
MSH5O43196 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
MSH5O43196 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
MSH5O43196 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
MSH5O43196 YY1P1-201ENST00000427625 668 ntBASIC26.37■■□□□ 1.81
MSH5O43196 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC26.37■■□□□ 1.81
MSH5O43196 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC26.37■■□□□ 1.81
MSH5O43196 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
MSH5O43196 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC26.37■■□□□ 1.81
MSH5O43196 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC26.37■■□□□ 1.81
MSH5O43196 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC26.37■■□□□ 1.81
MSH5O43196 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
MSH5O43196 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
MSH5O43196 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms