Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC15.76■□□□□ 0.11
HMGB3O15347 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HMGB3O15347 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
HMGB3O15347 Z82202.1-201ENST00000623446 1880 ntBASIC15.76■□□□□ 0.11
HMGB3O15347 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
HMGB3O15347 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
HMGB3O15347 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
HMGB3O15347 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC15.75■□□□□ 0.11
HMGB3O15347 AC005082.1-201ENST00000413042 2259 ntBASIC15.75■□□□□ 0.11
HMGB3O15347 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC15.75■□□□□ 0.11
HMGB3O15347 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.75■□□□□ 0.11
HMGB3O15347 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.75■□□□□ 0.11
HMGB3O15347 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
HMGB3O15347 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
HMGB3O15347 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC15.75■□□□□ 0.11
HMGB3O15347 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC15.75■□□□□ 0.11
HMGB3O15347 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB3O15347 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC15.75■□□□□ 0.11
HMGB3O15347 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.75■□□□□ 0.11
HMGB3O15347 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC15.74■□□□□ 0.11
HMGB3O15347 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
HMGB3O15347 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
HMGB3O15347 GRAMD4P7-201ENST00000578182 1232 ntBASIC15.74■□□□□ 0.11
HMGB3O15347 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGB3O15347 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
HMGB3O15347 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
HMGB3O15347 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGB3O15347 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
HMGB3O15347 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB3O15347 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
HMGB3O15347 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB3O15347 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB3O15347 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB3O15347 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB3O15347 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB3O15347 OR2A1-AS1-204ENST00000470435 602 ntBASIC15.73■□□□□ 0.11
HMGB3O15347 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC15.73■□□□□ 0.11
HMGB3O15347 AC133561.4-201ENST00000566112 224 ntBASIC15.73■□□□□ 0.11
HMGB3O15347 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB3O15347 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC15.73■□□□□ 0.11
HMGB3O15347 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
HMGB3O15347 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
HMGB3O15347 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB3O15347 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB3O15347 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB3O15347 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
HMGB3O15347 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC15.73■□□□□ 0.11
HMGB3O15347 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB3O15347 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB3O15347 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB3O15347 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
HMGB3O15347 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB3O15347 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB3O15347 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB3O15347 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB3O15347 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
HMGB3O15347 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB3O15347 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
HMGB3O15347 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
HMGB3O15347 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms