Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDCBPO00560 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
SDCBPO00560 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SDCBPO00560 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SDCBPO00560 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDCBPO00560 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SDCBPO00560 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
SDCBPO00560 AC100791.3-201ENST00000617619 330 ntBASIC16.64■□□□□ 0.25
SDCBPO00560 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SDCBPO00560 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
SDCBPO00560 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDCBPO00560 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDCBPO00560 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC16.64■□□□□ 0.25
SDCBPO00560 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
SDCBPO00560 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
SDCBPO00560 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SDCBPO00560 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
SDCBPO00560 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDCBPO00560 AC009237.14-201ENST00000609975 1594 ntBASIC16.64■□□□□ 0.25
SDCBPO00560 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
SDCBPO00560 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
SDCBPO00560 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC16.63■□□□□ 0.25
SDCBPO00560 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.63■□□□□ 0.25
SDCBPO00560 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SDCBPO00560 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 HCG11-201ENST00000411553 5696 ntBASIC16.63■□□□□ 0.25
SDCBPO00560 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC16.63■□□□□ 0.25
SDCBPO00560 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
SDCBPO00560 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC16.63■□□□□ 0.25
SDCBPO00560 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
SDCBPO00560 MAZ-216ENST00000616501 991 ntTSL 5 BASIC16.63■□□□□ 0.25
SDCBPO00560 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC16.63■□□□□ 0.25
SDCBPO00560 PARP1-210ENST00000629232 477 ntTSL 5 BASIC16.63■□□□□ 0.25
SDCBPO00560 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SDCBPO00560 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SDCBPO00560 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDCBPO00560 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SDCBPO00560 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC16.62■□□□□ 0.25
SDCBPO00560 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
SDCBPO00560 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
SDCBPO00560 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SDCBPO00560 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC16.62■□□□□ 0.25
SDCBPO00560 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
SDCBPO00560 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SDCBPO00560 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC16.62■□□□□ 0.25
SDCBPO00560 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC16.62■□□□□ 0.25
SDCBPO00560 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SDCBPO00560 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SDCBPO00560 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC16.62■□□□□ 0.25
SDCBPO00560 GLI3-203ENST00000437480 451 ntTSL 2 BASIC16.62■□□□□ 0.25
SDCBPO00560 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC16.62■□□□□ 0.25
SDCBPO00560 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
SDCBPO00560 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SDCBPO00560 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.62■□□□□ 0.25
SDCBPO00560 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC16.62■□□□□ 0.25
SDCBPO00560 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC16.62■□□□□ 0.25
SDCBPO00560 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC16.62■□□□□ 0.25
SDCBPO00560 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDCBPO00560 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SDCBPO00560 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SDCBPO00560 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC16.61■□□□□ 0.25
SDCBPO00560 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC16.61■□□□□ 0.25
SDCBPO00560 APTR-203ENST00000430801 583 ntTSL 5 BASIC16.61■□□□□ 0.25
SDCBPO00560 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC16.61■□□□□ 0.25
SDCBPO00560 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
SDCBPO00560 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDCBPO00560 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC16.61■□□□□ 0.25
SDCBPO00560 AC005181.1-201ENST00000604782 1256 ntBASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms