Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 AC105233.4-201ENST00000642045 216 ntBASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 KRT8P17-201ENST00000453110 1448 ntBASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 AL512353.2-201ENST00000448759 1962 ntBASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV1-1A0A0B4J248 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 AC007322.3-201ENST00000426526 701 ntBASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 PTBP1P-201ENST00000554374 1601 ntBASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV1-1A0A0B4J248 AC067852.2-201ENST00000590513 2313 ntBASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 FZD10-202ENST00000539839 3282 ntBASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
TRAV1-1A0A0B4J248 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 SAPCD2P1-201ENST00000395413 1184 ntBASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms